Difference between revisions of "RXN66-320"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN0-6731 == * direction: ** left-to-right * common-name: ** 16s rrna m2g1516 methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction RXN66-320 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5] == Reaction formula == * 1 ZYMO...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN0-6731 ==
+
== Reaction RXN66-320 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** 16s rrna m2g1516 methyltransferase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.1.1.242 ec-2.1.1.242]
+
** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[16S-rRNA-guanine1516]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[16S-rRNA-N2methylguanine1516]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ZYMOSTEROL]][c] '''=>''' 1 [[5-ALPHA-CHOLESTA-724-DIEN-3-BETA-OL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ19298]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
 +
** '''14''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY66-341]], cholesterol biosynthesis I:
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 +
* category: [[manual]]; source: [[reactions_add_sjap]]; tool: [[curation]]; comment: curation sterols (girard et al.)
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR123334
+
* METANETX-RXN : MNXR109128
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43221 43221]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34000 34000]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04804 R04804]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=16s rrna m2g1516 methyltransferase}}
+
{{#set: ec-number=ec-5.3.3.5}}
{{#set: ec-number=ec-2.1.1.242}}
+
{{#set: nb gene associated=0}}
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=2}}
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=manual|gap-filling}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=curation|meneco}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling|curation sterols (girard et al.)}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_sjap|gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Latest revision as of 11:25, 18 March 2021

Reaction RXN66-320

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-4, cholesterol biosynthesis III (via desmosterol):
    • 14 reactions found over 4 reactions in the full pathway
  • PWY66-341, cholesterol biosynthesis I:
    • 14 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR109128
  • RHEA:
  • LIGAND-RXN: