Difference between revisions of "RXN66-542"
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(Created page with "Category:reaction == Reaction RETINOL-O-FATTY-ACYLTRANSFERASE-RXN == * direction: ** reversible * common-name: ** retinol o-fatty-acyltransferase * ec-number: ** [http://e...") |
(Created page with "Category:reaction == Reaction RNA-LIGASE-ATP-RXN == * direction: ** left-to-right * common-name: ** rna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.3 e...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RNA-LIGASE-ATP-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** rna ligase (atp) |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.5.1.3 ec-6.5.1.3] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[3Prime-OH-Terminated-RNAs]][c] '''+''' 1 [[5-Phospho-RNA]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[RNA-Holder]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ14703]] |
| − | ** Category: [[ | + | ** Category: [[orthology]] |
| − | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | + | * Gene: [[SJ03634]] | |
| − | |||
| − | |||
| − | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| − | |||
| − | |||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07640 R07640] |
| − | {{#set: direction= | + | * UNIPROT: |
| − | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P00971 P00971] |
| − | {{#set: ec-number=ec- | + | {{#set: direction=left-to-right}} |
| − | {{#set: nb gene associated= | + | {{#set: common-name=rna ligase (atp)}} |
| + | {{#set: ec-number=ec-6.5.1.3}} | ||
| + | {{#set: nb gene associated=2}} | ||
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:22, 15 January 2021
Contents
Reaction RNA-LIGASE-ATP-RXN
- direction:
- left-to-right
- common-name:
- rna ligase (atp)
- ec-number:
Reaction formula
- 1 3Prime-OH-Terminated-RNAs[c] + 1 5-Phospho-RNA[c] + 1 ATP[c] => 1 AMP[c] + 1 PPI[c] + 1 RNA-Holder[c]
Gene(s) associated with this reaction
- Gene: SJ14703
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ03634
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
