Difference between revisions of "RXN66-542"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name: **...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12477 RXN-12477] == * direction: ** left-to-right * common-name: ** cytidine4 in trnapro 2'-o-m...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12477 RXN-12477] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** valine-trna ligase
+
** cytidine4 in trnapro 2'-o-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.9 ec-6.1.1.9]
+
** [http://enzyme.expasy.org/EC/2.1.1.225 ec-2.1.1.225]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[VAL]][c] '''+''' 1 [[VAL-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Pro-tRNA-Cytidine4]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pro-tRNA-2-O-MeCytidine4]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07716]]
−
* Gene: [[SJ20484]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05104]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04395]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02063]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02072]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16362]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05105]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15367]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''11''' reactions found over '''15''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10705 10705]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32768 32768]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P28350 P28350]
 
−
** [http://www.uniprot.org/uniprot/P36420 P36420]
 
−
** [http://www.uniprot.org/uniprot/P56000 P56000]
 
−
** [http://www.uniprot.org/uniprot/O51680 O51680]
 
−
** [http://www.uniprot.org/uniprot/O67411 O67411]
 
−
** [http://www.uniprot.org/uniprot/O83998 O83998]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
 
−
** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
 
−
** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
 
−
** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
 
−
** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
 
−
** [http://www.uniprot.org/uniprot/Q58413 Q58413]
 
−
** [http://www.uniprot.org/uniprot/P43834 P43834]
 
−
** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
 
−
** [http://www.uniprot.org/uniprot/O84304 O84304]
 
−
** [http://www.uniprot.org/uniprot/P47576 P47576]
 
−
** [http://www.uniprot.org/uniprot/Q94678 Q94678]
 
−
** [http://www.uniprot.org/uniprot/Q04462 Q04462]
 
−
** [http://www.uniprot.org/uniprot/P26640 P26640]
 
−
** [http://www.uniprot.org/uniprot/Q05873 Q05873]
 
−
** [http://www.uniprot.org/uniprot/Q26177 Q26177]
 
−
** [http://www.uniprot.org/uniprot/P75304 P75304]
 
−
** [http://www.uniprot.org/uniprot/Q49021 Q49021]
 
−
** [http://www.uniprot.org/uniprot/P11931 P11931]
 
−
** [http://www.uniprot.org/uniprot/P07806 P07806]
 
−
** [http://www.uniprot.org/uniprot/P07118 P07118]
 
−
** [http://www.uniprot.org/uniprot/O77443 O77443]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=valine-trna ligase}}
+
{{#set: common-name=cytidine4 in trnapro 2'-o-methyltransferase}}
−
{{#set: ec-number=ec-6.1.1.9}}
+
{{#set: ec-number=ec-2.1.1.225}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:26, 26 August 2019

Reaction RXN-12477

  • direction:
    • left-to-right
  • common-name:
    • cytidine4 in trnapro 2'-o-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6829, tRNA methylation (yeast): PWY-6829
    • 11 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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