Difference between revisions of "RXN66-542"

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(Created page with "Category:reaction == Reaction TYROSINE-AMINOTRANSFERASE-RXN == * direction: ** reversible * common-name: ** l-phenylalanine:2-oxoglutarate aminotransferase ** l-tyrosine:2...")
(Created page with "Category:reaction == Reaction RXN-11860 == * direction: ** left-to-right * common-name: ** trna (cytidine-2'-o)-ribose methyltransferase * ec-number: ** [http://enzyme.exp...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TYROSINE-AMINOTRANSFERASE-RXN ==
+
== Reaction RXN-11860 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** l-phenylalanine:2-oxoglutarate aminotransferase
+
** trna (cytidine-2'-o)-ribose methyltransferase
−
** l-tyrosine:2-oxoglutarate aminotransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.57 ec-2.6.1.57]
+
** [http://enzyme.expasy.org/EC/2.1.1.207 ec-2.1.1.207]
−
** [http://enzyme.expasy.org/EC/2.6.1.5 ec-2.6.1.5]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TYR]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c]
+
* 1 [[Cytidine-34-tRNAs]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[2-O-Methylcytidine-34-tRNAs]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ09745]]
−
* Gene: [[SJ20943]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07466]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05778]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07646]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04188]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY-3581]], (S)-reticuline biosynthesis I:
 
−
** '''6''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY3O-4108]], L-tyrosine degradation III:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5048]], rosmarinic acid biosynthesis I:
 
−
** '''1''' reactions found over '''10''' reactions in the full pathway
 
−
* [[TYRFUMCAT-PWY]], L-tyrosine degradation I:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7514]], L-tyrosine degradation IV (to 4-methylphenol):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5886]], 4-hydroxyphenylpyruvate biosynthesis:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7518]], atromentin biosynthesis:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TYRSYN]], L-tyrosine biosynthesis I:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes):
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5151]], L-tyrosine degradation II:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15096 15096]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43085 43085]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P74861 P74861]
+
{{#set: common-name=trna (cytidine-2'-o)-ribose methyltransferase}}
−
** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
+
{{#set: ec-number=ec-2.1.1.207}}
−
** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P95468 P95468]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
 
−
** [http://www.uniprot.org/uniprot/O58489 O58489]
 
−
** [http://www.uniprot.org/uniprot/O59096 O59096]
 
−
** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
 
−
** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
 
−
** [http://www.uniprot.org/uniprot/Q02636 Q02636]
 
−
** [http://www.uniprot.org/uniprot/O84642 O84642]
 
−
** [http://www.uniprot.org/uniprot/P17735 P17735]
 
−
** [http://www.uniprot.org/uniprot/Q7M4A9 Q7M4A9]
 
−
** [http://www.uniprot.org/uniprot/P04693 P04693]
 
−
** [http://www.uniprot.org/uniprot/P04694 P04694]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00734 R00734]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=l-tyrosine:2-oxoglutarate aminotransferase|l-phenylalanine:2-oxoglutarate aminotransferase}}
 
−
{{#set: ec-number=ec-2.6.1.5|ec-2.6.1.57}}
 
−
{{#set: nb gene associated=5}}
 
−
{{#set: nb pathway associated=10}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:02, 5 January 2021

Reaction RXN-11860

  • direction:
    • left-to-right
  • common-name:
    • trna (cytidine-2'-o)-ribose methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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