Difference between revisions of "RXNQT-4142"

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(Created page with "Category:reaction == Reaction GLYCINE-N-METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** dimethylglycine n-methyltransferase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction RXNQT-4142 == * direction: ** left-to-right * common-name: ** l-galactose-1-phosphate phosphatase * ec-number: ** [http://enzyme.expasy.org/E...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYCINE-N-METHYLTRANSFERASE-RXN ==
+
== Reaction RXNQT-4142 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dimethylglycine n-methyltransferase
+
** l-galactose-1-phosphate phosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.20 ec-2.1.1.20]
+
** [http://enzyme.expasy.org/EC/3.1.3.93 ec-3.1.3.93]
−
* synonymous:
 
−
** glycine sarcosine n-methyltransferase
 
−
** s-adenosyl-l-methionine:sarcosine n-methyltransferase
 
−
** gmt
 
−
** glycine sarcosine dimethylglycine n-methyltransferase
 
−
** gsdmt
 
−
** gsmt
 
−
** apgsmt
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLY]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SARCOSINE]][c]
+
* 1 [[CPDQT-4]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[L-Galactopyranose]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ20976]]
−
* Gene: [[SJ12116]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12128]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18979]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12118]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04955]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12119]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18177]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03081]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02539]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10116]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02540]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14716]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11087]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
+
* [[PWY-882]], L-ascorbate biosynthesis I (plants, L-galactose pathway):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR111269
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19938 19938]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26350 26350]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00367 R00367]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07674 R07674]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P13255 P13255]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dimethylglycine n-methyltransferase}}
+
{{#set: common-name=l-galactose-1-phosphate phosphatase}}
−
{{#set: ec-number=ec-2.1.1.20}}
+
{{#set: ec-number=ec-3.1.3.93}}
−
{{#set: synonymous=gmt|gsdmt|apgsmt|s-adenosyl-l-methionine:sarcosine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|glycine sarcosine n-methyltransferase|gsmt}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb gene associated=11}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RXNQT-4142

  • direction:
    • left-to-right
  • common-name:
    • l-galactose-1-phosphate phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-882, L-ascorbate biosynthesis I (plants, L-galactose pathway):
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR111269
  • RHEA:
  • LIGAND-RXN:





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