Difference between revisions of "S-2-HYDROXY-ACID-OXIDASE-RXN"

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(Created page with "Category:reaction == Reaction RXN0-302 == * direction: ** left-to-right * common-name: ** 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction RXN-7952-CPD66-43/WATER//GLYCEROL/PALMITATE/PROTON.42. == * direction: ** left-to-right == Reaction formula == * 1.0 CPD66-43[c] '''+'''...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-302 ==
+
== Reaction RXN-7952-CPD66-43/WATER//GLYCEROL/PALMITATE/PROTON.42. ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c]
+
* 1.0 [[CPD66-43]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[GLYCEROL]][c] '''+''' 1.0 [[PALMITATE]][c] '''+''' 1.0 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21110]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23865 23865]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase}}
+
{{#set: nb gene associated=0}}
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{{#set: ec-number=ec-4.6.1.12}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=1}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 19:05, 14 January 2021

Reaction RXN-7952-CPD66-43/WATER//GLYCEROL/PALMITATE/PROTON.42.

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=S-2-HYDROXY-ACID-OXIDASE-RXN&oldid=103344"