Difference between revisions of "SAICARSYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-8309 == * direction: ** left-to-right * common-name: ** 1-18:3-2-16:2-monogalactosyldiacylglycerol desaturase * ec-number: ** [http://enz...")
(Created page with "Category:reaction == Reaction 3.2.1.8-RXN == * direction: ** left-to-right * common-name: ** endo-1,4-beta-xylanase ** endo-1,4-β-xylanase * ec-number: ** [http://enz...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8309 ==
+
== Reaction 3.2.1.8-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 1-18:3-2-16:2-monogalactosyldiacylglycerol desaturase
+
** endo-1,4-beta-xylanase
 +
** endo-1,4-β-xylanase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.19.35 ec-1.14.19.35]
+
** [http://enzyme.expasy.org/EC/3.2.1.8 ec-3.2.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-8078]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD-2190]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[1-4-beta-Xylan]][c] '''+''' n [[WATER]][c] '''=>''' n [[1-4-D-xylooligosaccharides]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03069]]
+
* Gene: [[SJ06513]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09228]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10590]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-782]], glycolipid desaturation:
+
* [[PWY-6784]], cellulose and hemicellulose degradation (cellulolosome):
−
** '''16''' reactions found over '''28''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P10478 P10478]
 +
** [http://www.uniprot.org/uniprot/Q9R5M7 Q9R5M7]
 +
** [http://www.uniprot.org/uniprot/Q7M519 Q7M519]
 +
** [http://www.uniprot.org/uniprot/Q7M520 Q7M520]
 +
** [http://www.uniprot.org/uniprot/P35809 P35809]
 +
** [http://www.uniprot.org/uniprot/Q7M513 Q7M513]
 +
** [http://www.uniprot.org/uniprot/Q7M0W8 Q7M0W8]
 +
** [http://www.uniprot.org/uniprot/P23556 P23556]
 +
** [http://www.uniprot.org/uniprot/Q7M4V8 Q7M4V8]
 +
** [http://www.uniprot.org/uniprot/Q9R5M6 Q9R5M6]
 +
** [http://www.uniprot.org/uniprot/Q7M0X0 Q7M0X0]
 +
** [http://www.uniprot.org/uniprot/Q7M0W9 Q7M0W9]
 +
** [http://www.uniprot.org/uniprot/P45703 P45703]
 +
** [http://www.uniprot.org/uniprot/P18429 P18429]
 +
** [http://www.uniprot.org/uniprot/P40943 P40943]
 +
** [http://www.uniprot.org/uniprot/P54865 P54865]
 +
** [http://www.uniprot.org/uniprot/Q00177 Q00177]
 +
** [http://www.uniprot.org/uniprot/P79046 P79046]
 +
** [http://www.uniprot.org/uniprot/O83007 O83007]
 +
** [http://www.uniprot.org/uniprot/Q9UUQ2 Q9UUQ2]
 +
** [http://www.uniprot.org/uniprot/Q9HFA4 Q9HFA4]
 +
** [http://www.uniprot.org/uniprot/Q9F1V3 Q9F1V3]
 +
** [http://www.uniprot.org/uniprot/Q9AJR9 Q9AJR9]
 +
** [http://www.uniprot.org/uniprot/P29417 P29417]
 +
** [http://www.uniprot.org/uniprot/P26514 P26514]
 +
** [http://www.uniprot.org/uniprot/P26220 P26220]
 +
** [http://www.uniprot.org/uniprot/Q9R5P8 Q9R5P8]
 +
** [http://www.uniprot.org/uniprot/Q9R5P9 Q9R5P9]
 +
** [http://www.uniprot.org/uniprot/P09850 P09850]
 +
** [http://www.uniprot.org/uniprot/P14768 P14768]
 +
** [http://www.uniprot.org/uniprot/P45796 P45796]
 +
** [http://www.uniprot.org/uniprot/P29126 P29126]
 +
** [http://www.uniprot.org/uniprot/P29127 P29127]
 +
** [http://www.uniprot.org/uniprot/Q02244 Q02244]
 +
** [http://www.uniprot.org/uniprot/P40944 P40944]
 +
** [http://www.uniprot.org/uniprot/P55334 P55334]
 +
** [http://www.uniprot.org/uniprot/Q56013 Q56013]
 +
** [http://www.uniprot.org/uniprot/Q59256 Q59256]
 +
** [http://www.uniprot.org/uniprot/P55328 P55328]
 +
** [http://www.uniprot.org/uniprot/Q01426 Q01426]
 +
** [http://www.uniprot.org/uniprot/P55331 P55331]
 +
** [http://www.uniprot.org/uniprot/Q59257 Q59257]
 +
** [http://www.uniprot.org/uniprot/P51584 P51584]
 +
** [http://www.uniprot.org/uniprot/P49942 P49942]
 +
** [http://www.uniprot.org/uniprot/P55333 P55333]
 +
** [http://www.uniprot.org/uniprot/P55332 P55332]
 +
** [http://www.uniprot.org/uniprot/Q59790 Q59790]
 +
** [http://www.uniprot.org/uniprot/Q59300 Q59300]
 +
** [http://www.uniprot.org/uniprot/Q59301 Q59301]
 +
** [http://www.uniprot.org/uniprot/Q59674 Q59674]
 +
** [http://www.uniprot.org/uniprot/Q59675 Q59675]
 +
** [http://www.uniprot.org/uniprot/Q60037 Q60037]
 +
** [http://www.uniprot.org/uniprot/Q12579 Q12579]
 +
** [http://www.uniprot.org/uniprot/Q12580 Q12580]
 +
** [http://www.uniprot.org/uniprot/Q60046 Q60046]
 +
** [http://www.uniprot.org/uniprot/P93185 P93185]
 +
** [http://www.uniprot.org/uniprot/P93186 P93186]
 +
** [http://www.uniprot.org/uniprot/P93187 P93187]
 +
** [http://www.uniprot.org/uniprot/Q12603 Q12603]
 +
** [http://www.uniprot.org/uniprot/O69230 O69230]
 +
** [http://www.uniprot.org/uniprot/O30426 O30426]
 +
** [http://www.uniprot.org/uniprot/O52373 O52373]
 +
** [http://www.uniprot.org/uniprot/Q59278 Q59278]
 +
** [http://www.uniprot.org/uniprot/Q9RKN6 Q9RKN6]
 +
** [http://www.uniprot.org/uniprot/P00694 P00694]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=1-18:3-2-16:2-monogalactosyldiacylglycerol desaturase}}
+
{{#set: common-name=endo-1,4-&beta;-xylanase|endo-1,4-beta-xylanase}}
−
{{#set: ec-number=ec-1.14.19.35}}
+
{{#set: ec-number=ec-3.2.1.8}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:07, 5 January 2021

Reaction 3.2.1.8-RXN

  • direction:
    • left-to-right
  • common-name:
    • endo-1,4-beta-xylanase
    • endo-1,4-β-xylanase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6784, cellulose and hemicellulose degradation (cellulolosome):
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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