Difference between revisions of "SJ05905"

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(Created page with "Category:gene == Gene SJ00669 == * transcription-direction: ** negative * right-end-position: ** 154563 * left-end-position: ** 148234 * centisome-position: ** 90.49915...")
(Created page with "Category:gene == Gene SJ05905 == * transcription-direction: ** positive * right-end-position: ** 43412 * left-end-position: ** 34137 * centisome-position: ** 39.46337...")
 
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[[Category:gene]]
 
[[Category:gene]]
== Gene SJ00669 ==
+
== Gene SJ05905 ==
 
* transcription-direction:
 
* transcription-direction:
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
** 154563
+
** 43412
 
* left-end-position:
 
* left-end-position:
** 148234
+
** 34137
 
* centisome-position:
 
* centisome-position:
** 90.49915    
+
** 39.46337    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[RXN-4021]]
* [[ENTDB-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
** Category: [[orthology]]
+
* [[RXN3O-178]]
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[HOLO-ACP-SYNTH-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-10994]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-15889]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-16759]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
* [[ENTBACSYN-PWY]]
+
* [[PWY-2541]]
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''11''' reactions found over '''35''' reactions in the full pathway
* [[PWY-6012]]
+
* [[PWY-7155]]
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
* [[PWY-6012-1]]
+
* [[PWY-6075]]
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
{{#set: transcription-direction=negative}}
+
{{#set: transcription-direction=positive}}
{{#set: right-end-position=154563}}
+
{{#set: right-end-position=43412}}
{{#set: left-end-position=148234}}
+
{{#set: left-end-position=34137}}
{{#set: centisome-position=90.49915   }}
+
{{#set: centisome-position=39.46337   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=2}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}

Latest revision as of 11:07, 18 March 2021

Gene SJ05905

  • transcription-direction:
    • positive
  • right-end-position:
    • 43412
  • left-end-position:
    • 34137
  • centisome-position:
    • 39.46337

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-2541
    • 11 reactions found over 35 reactions in the full pathway
  • PWY-7155
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6075
    • 3 reactions found over 5 reactions in the full pathway