Difference between revisions of "SJ06255"

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(Created page with "Category:gene == Gene SJ15366 == * transcription-direction: ** positive * right-end-position: ** 74247 * left-end-position: ** 59878 * centisome-position: ** 20.204071...")
(Created page with "Category:gene == Gene SJ01255 == * transcription-direction: ** negative * right-end-position: ** 111204 * left-end-position: ** 92324 * centisome-position: ** 60.07939...")
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[[Category:gene]]
 
[[Category:gene]]
== Gene SJ15366 ==
+
== Gene SJ01255 ==
 
* transcription-direction:
 
* transcription-direction:
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
** 74247
+
** 111204
 
* left-end-position:
 
* left-end-position:
** 59878
+
** 92324
 
* centisome-position:
 
* centisome-position:
** 20.204071    
+
** 60.07939    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[2.4.1.151-RXN]]
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[5-NUCLEOTID-RXN]]
+
* [[2.4.1.46-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
* [[AMP-DEPHOSPHORYLATION-RXN]]
+
* [[RXN-16027]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[NUCLEOTIDASE-RXN]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-14025]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-14026]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-14227]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-14473]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-17947]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-17948]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-5841]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-7607]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-7609]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[XMPXAN-RXN]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7434]]
* [[SALVADEHYPOX-PWY]]
+
** '''5''' reactions found over '''8''' reactions in the full pathway
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-401]]
* [[PWY-7821]]
+
** '''2''' reactions found over '''5''' reactions in the full pathway
** '''2''' reactions found over '''9''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
* [[PWY-7185]]
+
{{#set: right-end-position=111204}}
** '''5''' reactions found over '''7''' reactions in the full pathway
+
{{#set: left-end-position=92324}}
* [[PWY-5381]]
+
{{#set: centisome-position=60.07939   }}
** '''6''' reactions found over '''11''' reactions in the full pathway
 
* [[NAD-BIOSYNTHESIS-II]]
 
** '''4''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-6596]]
 
** '''7''' reactions found over '''8''' reactions in the full pathway
 
* [[PWY-6606]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6607]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6608]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-5695]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: right-end-position=74247}}
 
{{#set: left-end-position=59878}}
 
{{#set: centisome-position=20.204071   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
{{#set: nb reaction associated=14}}
+
{{#set: nb reaction associated=3}}
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=2}}

Revision as of 11:03, 15 January 2021

Gene SJ01255

  • transcription-direction:
    • negative
  • right-end-position:
    • 111204
  • left-end-position:
    • 92324
  • centisome-position:
    • 60.07939

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7434
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-401
    • 2 reactions found over 5 reactions in the full pathway