Difference between revisions of "SJ07762"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12321 CPD-12321] == * common-name: ** 15-cis-phytoene * smiles: ** cc(c)=cccc(c)=cccc(c)=cc...")
(Created page with "Category:gene == Gene SJ07762 == * transcription-direction: ** negative * right-end-position: ** 33939 * left-end-position: ** 27138 * centisome-position: ** 43.40205...")
 
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[[Category:metabolite]]
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[[Category:gene]]
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12321 CPD-12321] ==
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== Gene SJ07762 ==
* common-name:
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* transcription-direction:
** 15-cis-phytoene
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** negative
* smiles:
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* right-end-position:
** cc(c)=cccc(c)=cccc(c)=cccc(c)=cc=cc=c(ccc=c(ccc=c(ccc=c(c)c)c)c)c
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** 33939
* inchi-key:
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* left-end-position:
** yvlpjigomtxxlp-bhljudrvsa-n
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** 27138
* molecular-weight:
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* centisome-position:
** 544.946
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** 43.40205   
== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
* [[RXN-11355]]
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* [[S.japonica_carotenoid_curated]]
* [[RXN-12243]]
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== Reaction(s) associated ==
* [[RXN-12413]]
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* [[CARBODEHYDRAT-RXN]]
== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
* [[RXN-13323]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXNARA-8002]]
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** Category: [[orthology]]
== Reaction(s) of unknown directionality ==
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
{{#set: common-name=15-cis-phytoene}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
{{#set: inchi-key=inchikey=yvlpjigomtxxlp-bhljudrvsa-n}}
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* [[RXN0-5224]]
{{#set: molecular-weight=544.946}}
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== Pathway(s) associated ==
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* [[PWY-7115]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7117]]
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** '''10''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-6142]]
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** '''10''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5744]]
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** '''4''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWYQT-4429]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[CYANCAT-PWY]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5789]]
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** '''8''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-5743]]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-241]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
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{{#set: right-end-position=33939}}
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{{#set: left-end-position=27138}}
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{{#set: centisome-position=43.40205    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=2}}
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{{#set: nb pathway associated=9}}

Latest revision as of 11:01, 18 March 2021

Gene SJ07762

  • transcription-direction:
    • negative
  • right-end-position:
    • 33939
  • left-end-position:
    • 27138
  • centisome-position:
    • 43.40205

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7115
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWYQT-4429
    • 2 reactions found over 2 reactions in the full pathway
  • CYANCAT-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-241
    • 5 reactions found over 7 reactions in the full pathway