Difference between revisions of "SJ09285"

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(Created page with "Category:gene == Gene SJ14768 == * transcription-direction: ** negative * right-end-position: ** 527286 * left-end-position: ** 518695 * centisome-position: ** 72.83978...")
(Created page with "Category:gene == Gene SJ09285 == * transcription-direction: ** positive * right-end-position: ** 299387 * left-end-position: ** 297649 * centisome-position: ** 70.76200...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ14768 ==
+
== Gene SJ09285 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 527286
+
** 299387
 
* left-end-position:
 
* left-end-position:
−
** 518695
+
** 297649
 
* centisome-position:
 
* centisome-position:
−
** 72.83978    
+
** 70.76200    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[APIGNAR-RXN]]
−
* [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ALCOHOL-DEHYDROG-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[CHALCONE-ISOMERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[MYO-INOSITOL-2-DEHYDROGENASE-RXN]]
+
* [[RXN-3221]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10781]]
+
* [[RXN-7647]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10911]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10915]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12448]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13198]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14148]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-5424]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-7657]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-7693]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-7694]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-7700]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-7706]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN3O-4113]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-478]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY1F-FLAVSYN]]
−
* [[PWY-6587]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-6787]]
−
* [[PWY-5480]]
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-7397]]
−
* [[P161-PWY]]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-7897]]
−
* [[FERMENTATION-PWY]]
+
** '''3''' reactions found over '''15''' reactions in the full pathway
−
** '''11''' reactions found over '''16''' reactions in the full pathway
+
* [[PWY-2002]]
−
* [[PWY-6333]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5486]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[P122-PWY]]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY66-21]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[ETOH-ACETYLCOA-ANA-PWY]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY4LZ-257]]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7118]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5940]]
 
−
** '''2''' reactions found over '''18''' reactions in the full pathway
 
−
* [[P562-PWY]]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7241]]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7237]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6313]]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6342]]
 
−
** '''8''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7013]]
 
 
** '''1''' reactions found over '''5''' reactions in the full pathway
 
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-3162]]
+
* [[PWY-6325]]
−
** '''2''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7396]]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5057]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7111]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5076]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6871]]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5078]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5751]]
 
 
** '''1''' reactions found over '''5''' reactions in the full pathway
 
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5079]]
+
* [[PWY-5059]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5082]]
+
{{#set: transcription-direction=positive}}
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
{{#set: right-end-position=299387}}
−
* [[PWY-6802]]
+
{{#set: left-end-position=297649}}
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
{{#set: centisome-position=70.76200   }}
−
* [[PWY3O-4108]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY66-389]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=527286}}
 
−
{{#set: left-end-position=518695}}
 
−
{{#set: centisome-position=72.83978   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=17}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=31}}
+
{{#set: nb pathway associated=7}}

Latest revision as of 11:10, 18 March 2021

Gene SJ09285

  • transcription-direction:
    • positive
  • right-end-position:
    • 299387
  • left-end-position:
    • 297649
  • centisome-position:
    • 70.76200

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY1F-FLAVSYN
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6787
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7397
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7897
    • 3 reactions found over 15 reactions in the full pathway
  • PWY-2002
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6325
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-5059
    • 3 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ09285&oldid=136549"