Difference between revisions of "SJ11016"

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(Created page with "Category:gene == Gene SJ01848 == * transcription-direction: ** negative * right-end-position: ** 482765 * left-end-position: ** 466666 * centisome-position: ** 85.121216...")
(Created page with "Category:gene == Gene SJ11016 == * transcription-direction: ** negative * right-end-position: ** 1352940 * left-end-position: ** 1347399 * centisome-position: ** 93.279236...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ01848 ==
+
== Gene SJ11016 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 482765
+
** 1352940
 
* left-end-position:
 
* left-end-position:
−
** 466666
+
** 1347399
 
* centisome-position:
 
* centisome-position:
−
** 85.121216    
+
** 93.279236    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[2.3.1.168-RXN]]
−
* [[6.3.5.6-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[6.3.5.7-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[AMIDASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[2KETO-3METHYLVALERATE-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[GUANIDINOBUTANAMIDE-NH3-RXN]]
+
* [[DHRT_LPAREN_2mbcoa_RPAREN_]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[PYRAZIN-RXN]]
+
* [[DHRT_LPAREN_ibcoa_RPAREN_]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[R311-RXN]]
+
* [[ISOVALERYLCOA-DHLIPOAMIDE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[MBCOA-DHLIPOAMIDE-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14727]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14728]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-17608]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXNN-404]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY490-4]]
+
* [[PWY-5046]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5921]]
+
* [[PWY-5108]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[ARGDEG-V-PWY]]
+
* [[ILEUDEG-PWY]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7308]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5025]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-3161]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-581]]
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=482765}}
+
{{#set: right-end-position=1352940}}
−
{{#set: left-end-position=466666}}
+
{{#set: left-end-position=1347399}}
−
{{#set: centisome-position=85.121216   }}
+
{{#set: centisome-position=93.279236   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=10}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=3}}

Latest revision as of 11:07, 18 March 2021

Gene SJ11016

  • transcription-direction:
    • negative
  • right-end-position:
    • 1352940
  • left-end-position:
    • 1347399
  • centisome-position:
    • 93.279236

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5046
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5108
    • 2 reactions found over 3 reactions in the full pathway
  • ILEUDEG-PWY
    • 5 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ11016&oldid=134670"