Difference between revisions of "SJ16098"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN RIBOFLAVIN] == * common-name: ** riboflavin * smiles: ** cc1(c=c3(c(=cc(c)=1)n(cc(o)...")
 
(Created page with "Category:gene == Gene SJ16098 == * transcription-direction: ** negative * right-end-position: ** 5978 * left-end-position: ** 1614 * centisome-position: ** 26.581028 =...")
 
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[[Category:metabolite]]
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[[Category:gene]]
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN RIBOFLAVIN] ==
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== Gene SJ16098 ==
* common-name:
+
* transcription-direction:
** riboflavin
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** negative
* smiles:
+
* right-end-position:
** cc1(c=c3(c(=cc(c)=1)n(cc(o)c(o)c(o)co)c2(c(c(=o)[n-]c(=o)n=2)=n3)))
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** 5978
* inchi-key:
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* left-end-position:
** aunganrzjhbgpy-scrdcrapsa-m
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** 1614
* molecular-weight:
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* centisome-position:
** 375.36
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** 26.581028   
== Reaction(s) known to consume the compound ==
+
== Organism(s) associated with this gene  ==
* [[ARPT]]
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* [[S.japonica_carotenoid_curated]]
* [[NADPH-DEHYDROGENASE-FLAVIN-RXN]]
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== Reaction(s) associated ==
* [[RIBOFLAVINKIN-RXN]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* [[RXN-12445]]
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* [[4-NITROPHENYLPHOSPHATASE-RXN]]
== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
* [[RIBOFLAVIN-SYN-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN0-5187]]
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* [[5-NUCLEOTID-RXN]]
== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
{{#set: common-name=riboflavin}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
{{#set: inchi-key=inchikey=aunganrzjhbgpy-scrdcrapsa-m}}
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** Category: [[orthology]]
{{#set: molecular-weight=375.36}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[AMP-DEPHOSPHORYLATION-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[NUCLEOTIDASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14025]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14026]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14227]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14473]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17947]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17948]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-5841]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7607]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7609]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[XMPXAN-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[SALVADEHYPOX-PWY]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7821]]
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** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7185]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5381]]
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** '''6''' reactions found over '''11''' reactions in the full pathway
 +
* [[NAD-BIOSYNTHESIS-II]]
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** '''4''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6596]]
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** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6606]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6607]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6608]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5695]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=5978}}
 +
{{#set: left-end-position=1614}}
 +
{{#set: centisome-position=26.581028    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=14}}
 +
{{#set: nb pathway associated=10}}

Latest revision as of 11:01, 18 March 2021

Gene SJ16098

  • transcription-direction:
    • negative
  • right-end-position:
    • 5978
  • left-end-position:
    • 1614
  • centisome-position:
    • 26.581028

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7821
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-7185
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5381
    • 6 reactions found over 11 reactions in the full pathway
  • NAD-BIOSYNTHESIS-II
    • 4 reactions found over 3 reactions in the full pathway
  • PWY-6596
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-6606
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6607
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6608
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5695
    • 4 reactions found over 4 reactions in the full pathway