Difference between revisions of "SJ19480"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ10621 == * transcription-direction: ** negative * right-end-position: ** 322269 * left-end-position: ** 305442 * centisome-position: ** 78.901726...")
 
(Created page with "Category:gene == Gene SJ13608 == * transcription-direction: ** positive * right-end-position: ** 186273 * left-end-position: ** 176539 * centisome-position: ** 52.994503...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
== Gene SJ10621 ==
+
== Gene SJ13608 ==
 
* transcription-direction:
 
* transcription-direction:
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
** 322269
+
** 186273
 
* left-end-position:
 
* left-end-position:
** 305442
+
** 176539
 
* centisome-position:
 
* centisome-position:
** 78.901726    
+
** 52.994503    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
* [[GLUTAMATE-DEHYDROGENASE-RXN]]
+
* [[2.4.1.151-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-1225]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* [[GLUTDEHYD-RXN]]
+
* [[RXN-18302]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7434]]
* [[GLUTAMATE-DEG1-PWY]]
+
** '''5''' reactions found over '''8''' reactions in the full pathway
** '''1''' reactions found over '''1''' reactions in the full pathway
+
* [[PWY-401]]
* [[ALACAT2-PWY]]
+
** '''2''' reactions found over '''5''' reactions in the full pathway
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-7666]]
* [[PWY-5022]]
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-7126]]
 
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
** '''1''' reactions found over '''3''' reactions in the full pathway
* [[PWY-6728]]
+
* [[PWY-7840]]
** '''11''' reactions found over '''19''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
* [[P162-PWY]]
+
{{#set: transcription-direction=positive}}
** '''7''' reactions found over '''11''' reactions in the full pathway
+
{{#set: right-end-position=186273}}
* [[GLUTSYNIII-PWY]]
+
{{#set: left-end-position=176539}}
** '''1''' reactions found over '''1''' reactions in the full pathway
+
{{#set: centisome-position=52.994503   }}
* [[PWY-5675]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY490-3]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-5913]]
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
</div>
 
{{#set: transcription-direction=negative}}
 
{{#set: right-end-position=322269}}
 
{{#set: left-end-position=305442}}
 
{{#set: centisome-position=78.901726   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
{{#set: nb reaction associated=2}}
+
{{#set: nb reaction associated=3}}
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=4}}

Revision as of 14:22, 26 August 2019

Gene SJ13608

  • transcription-direction:
    • positive
  • right-end-position:
    • 186273
  • left-end-position:
    • 176539
  • centisome-position:
    • 52.994503

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7434
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-401
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7666
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7840
    • 3 reactions found over 5 reactions in the full pathway