Difference between revisions of "SJ21967"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUCC-S-ALD SUCC-S-ALD] == * common-name: ** succinate semialdehyde * smiles: ** c([ch]=o)cc(=o)...")
(Created page with "Category:gene == Gene SJ21967 == * transcription-direction: ** negative * right-end-position: ** 192992 * left-end-position: ** 185854 * centisome-position: ** 31.658325...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUCC-S-ALD SUCC-S-ALD] ==
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== Gene SJ21967 ==
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* common-name:
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* transcription-direction:
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** succinate semialdehyde
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** negative
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* smiles:
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* right-end-position:
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** c([ch]=o)cc(=o)[o-]
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** 192992
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* inchi-key:
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* left-end-position:
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** uiujiqzeacwqsv-uhfffaoysa-m
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** 185854
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* molecular-weight:
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* centisome-position:
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** 101.082
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** 31.658325   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[GABATRANSAM-RXN]]
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-14146]]
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== Reaction(s) associated ==
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* [[RXN0-5293]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[SSNOm]]
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* [[ADENYL-KIN-RXN]]
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* [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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** Category: [[orthology]]
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* [[SUCCSEMIALDDEHYDROG-RXN]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== Reaction(s) known to produce the compound ==
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* [[ATCM]]
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* [[4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN]]
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** Category: [[orthology]]
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* [[GABATRANSAM-RXN]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14146]]
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* [[ATDCM]]
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== Reaction(s) of unknown directionality ==
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** Category: [[orthology]]
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{{#set: common-name=succinate semialdehyde}}
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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{{#set: inchi-key=inchikey=uiujiqzeacwqsv-uhfffaoysa-m}}
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* [[CDPKIN-RXN]]
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{{#set: molecular-weight=101.082}}
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[DADPKIN-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[DCDPKIN-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[DGDPKIN-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[DTDPKIN-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[DUDPKIN-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[GDPKIN-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[NUCLEOSIDE-DIP-KIN-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PROTEIN-KINASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11832]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-12002]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14120]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14228]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-7913]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[UDPKIN-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-7219]]
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** '''4''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7205]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7220]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7227]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7224]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7197]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-166]]
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** '''14''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7210]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7222]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7226]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7187]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PPGPPMET-PWY]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7221]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7176]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=192992}}
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{{#set: left-end-position=185854}}
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{{#set: centisome-position=31.658325    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=18}}
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{{#set: nb pathway associated=17}}

Latest revision as of 11:01, 18 March 2021

Gene SJ21967

  • transcription-direction:
    • negative
  • right-end-position:
    • 192992
  • left-end-position:
    • 185854
  • centisome-position:
    • 31.658325

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7219
    • 4 reactions found over 3 reactions in the full pathway
  • PWY-7205
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7220
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7227
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7224
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166
    • 14 reactions found over 13 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7222
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7226
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7187
    • 6 reactions found over 7 reactions in the full pathway
  • PPGPPMET-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7221
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7176
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ21967&oldid=132027"