Difference between revisions of "SUCFUMtmr"

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(Created page with "Category:reaction == Reaction ACETATE--COA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** acetate-coa ligase ** acetyl-coa synthetase (amp-forming) * ec-num...")
(Created page with "Category:reaction == Reaction NADH-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** nadh dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.6.99...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETATE--COA-LIGASE-RXN ==
+
== Reaction NADH-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** acetate-coa ligase
+
** nadh dehydrogenase
−
** acetyl-coa synthetase (amp-forming)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1]
+
** [http://enzyme.expasy.org/EC/1.6.99.3 ec-1.6.99.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Acceptor]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[Donor-H2]][c] '''+''' 1 [[NAD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08601]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19948]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15310]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09960]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21333]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18811]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21897]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10422]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05715]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18864]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02821]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14995]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21137]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22333]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19806]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16410]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19412]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02471]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21017]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16901]]
+
* Gene: [[SJ05616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04738]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-161]], ethanol degradation III:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7118]], chitin degradation to ethanol:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY66-162]], ethanol degradation IV:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY0-1313]], acetate conversion to acetyl-CoA:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-6672]], cis-genanyl-CoA degradation:
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-21]], ethanol degradation II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
−
* RHEA:
+
{{#set: common-name=nadh dehydrogenase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
+
{{#set: ec-number=ec-1.6.99.3}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=20}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
+
{{#set: nb pathway associated=0}}
−
* UNIPROT:
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P27095 P27095]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P31638 P31638]
 
−
** [http://www.uniprot.org/uniprot/Q12662 Q12662]
 
−
** [http://www.uniprot.org/uniprot/P28812 P28812]
 
−
** [http://www.uniprot.org/uniprot/P27550 P27550]
 
−
** [http://www.uniprot.org/uniprot/O34613 O34613]
 
−
** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
 
−
** [http://www.uniprot.org/uniprot/P36333 P36333]
 
−
** [http://www.uniprot.org/uniprot/Q01574 Q01574]
 
−
** [http://www.uniprot.org/uniprot/P39062 P39062]
 
−
** [http://www.uniprot.org/uniprot/Q01576 Q01576]
 
−
** [http://www.uniprot.org/uniprot/P52910 P52910]
 
−
** [http://www.uniprot.org/uniprot/Q55404 Q55404]
 
−
** [http://www.uniprot.org/uniprot/P16928 P16928]
 
−
** [http://www.uniprot.org/uniprot/P16929 P16929]
 
−
** [http://www.uniprot.org/uniprot/O68040 O68040]
 
−
** [http://www.uniprot.org/uniprot/P78773 P78773]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=acetate-coa ligase|acetyl-coa synthetase (amp-forming)}}
 
−
{{#set: ec-number=ec-6.2.1.1}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=6}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:40, 15 March 2021

Reaction NADH-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • nadh dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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