Difference between revisions of "THYMIDYLATESYN-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-21...")
(Created page with "Category:reaction == Reaction THYMIDYLATESYN-RXN == * direction: ** left-to-right * common-name: ** thymidylate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1...")
 
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269] ==
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== Reaction THYMIDYLATESYN-RXN ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
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** left-to-right
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
** adenosylcobalamin salvage from cobinamide ii
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** thymidylate synthase
== Reaction(s) found ==
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* ec-number:
* [[BTUR2-RXN]]
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** [http://enzyme.expasy.org/EC/2.1.1.45 ec-2.1.1.45]
== Reaction(s) not found ==
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== Reaction formula ==
* [http://metacyc.org/META/NEW-IMAGE?object=DMBPPRIBOSYLTRANS-RXN DMBPPRIBOSYLTRANS-RXN]
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* 1 [[DUMP]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[DIHYDROFOLATE-GLU-N]][c] '''+''' 1 [[TMP]][c]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6261 RXN-6261]
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== Gene(s) associated with this reaction  ==
* [http://metacyc.org/META/NEW-IMAGE?object=R346-RXN R346-RXN]
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* Gene: [[SJ19601]]
* [http://metacyc.org/META/NEW-IMAGE?object=COBALAMIN5PSYN-RXN COBALAMIN5PSYN-RXN]
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** Category: [[annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=COBINPGUANYLYLTRANS-RXN COBINPGUANYLYLTRANS-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8770 RXN-8770]
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** Category: [[orthology]]
{{#set: taxonomic-range=tax-2157|tax-2}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
{{#set: common-name=adenosylcobalamin salvage from cobinamide ii}}
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== Pathway(s) ==
{{#set: nb reaction found=1}}
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
{{#set: completion rate=0.17}}
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** '''6''' reactions found over '''7''' reactions in the full pathway
{{#set: nb total reaction=6}}
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* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[1CMET2-PWY]], folate transformations III (E. coli):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 +
** '''14''' reactions found over '''13''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR123914
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12105 12105]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P19368 P19368]
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** [http://www.uniprot.org/uniprot/Q07422 Q07422]
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** [http://www.uniprot.org/uniprot/P47469 P47469]
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** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
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** [http://www.uniprot.org/uniprot/P42326 P42326]
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** [http://www.uniprot.org/uniprot/O02604 O02604]
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** [http://www.uniprot.org/uniprot/P07382 P07382]
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** [http://www.uniprot.org/uniprot/P16126 P16126]
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** [http://www.uniprot.org/uniprot/P13922 P13922]
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** [http://www.uniprot.org/uniprot/P20712 P20712]
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** [http://www.uniprot.org/uniprot/P11044 P11044]
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** [http://www.uniprot.org/uniprot/P45350 P45350]
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** [http://www.uniprot.org/uniprot/P45352 P45352]
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** [http://www.uniprot.org/uniprot/P51820 P51820]
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** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
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** [http://www.uniprot.org/uniprot/Q27828 Q27828]
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** [http://www.uniprot.org/uniprot/P09249 P09249]
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** [http://www.uniprot.org/uniprot/P12462 P12462]
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** [http://www.uniprot.org/uniprot/P07606 P07606]
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** [http://www.uniprot.org/uniprot/P00471 P00471]
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** [http://www.uniprot.org/uniprot/P0A884 P0A884]
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** [http://www.uniprot.org/uniprot/P00469 P00469]
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** [http://www.uniprot.org/uniprot/O81395 O81395]
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** [http://www.uniprot.org/uniprot/Q05763 Q05763]
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** [http://www.uniprot.org/uniprot/Q39687 Q39687]
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** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
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** [http://www.uniprot.org/uniprot/P06785 P06785]
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** [http://www.uniprot.org/uniprot/P04818 P04818]
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** [http://www.uniprot.org/uniprot/P07607 P07607]
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** [http://www.uniprot.org/uniprot/P13100 P13100]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=thymidylate synthase}}
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{{#set: ec-number=ec-2.1.1.45}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=8}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction THYMIDYLATESYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • thymidylate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7199, pyrimidine deoxyribonucleosides salvage:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV:
    • 6 reactions found over 7 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
    • 8 reactions found over 8 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 14 reactions found over 13 reactions in the full pathway

Reconstruction information

External links