Difference between revisions of "TRIMETHYLLYSINE-DIOXYGENASE-RXN"

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(Created page with "Category:reaction == Reaction CYSTEINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** cysteine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction TRIMETHYLLYSINE-DIOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** trimethyllysine dioxygenase * ec-number: ** [http://enzyme...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CYSTEINE--TRNA-LIGASE-RXN ==
+
== Reaction TRIMETHYLLYSINE-DIOXYGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** cysteine-trna ligase
+
** trimethyllysine dioxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.16 ec-6.1.1.16]
+
** [http://enzyme.expasy.org/EC/1.14.11.8 ec-1.14.11.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[3-HYDROXY-N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19796]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ15054]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07386]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12451]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ04638]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09343]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ04640]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ04639]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09098]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12227]]
+
* Gene: [[SJ18761]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ01929]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21439]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
</div>
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-6100]], L-carnitine biosynthesis:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR108181
−
* METANETX-RXN : MNXR115795
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17774 17774]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14182 14182]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03451 R03451]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
 
−
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
 
−
** [http://www.uniprot.org/uniprot/P43816 P43816]
 
−
** [http://www.uniprot.org/uniprot/O29836 O29836]
 
−
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
 
−
** [http://www.uniprot.org/uniprot/O58370 O58370]
 
−
** [http://www.uniprot.org/uniprot/O83129 O83129]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
 
−
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
 
−
** [http://www.uniprot.org/uniprot/P41259 P41259]
 
−
** [http://www.uniprot.org/uniprot/O51545 O51545]
 
−
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
 
−
** [http://www.uniprot.org/uniprot/O67163 O67163]
 
−
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
 
−
** [http://www.uniprot.org/uniprot/P47495 P47495]
 
−
** [http://www.uniprot.org/uniprot/P75423 P75423]
 
−
** [http://www.uniprot.org/uniprot/P74330 P74330]
 
−
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
 
−
** [http://www.uniprot.org/uniprot/P21888 P21888]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=cysteine-trna ligase}}
+
{{#set: common-name=trimethyllysine dioxygenase}}
−
{{#set: ec-number=ec-6.1.1.16}}
+
{{#set: ec-number=ec-1.14.11.8}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=9}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction TRIMETHYLLYSINE-DIOXYGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • trimethyllysine dioxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6100, L-carnitine biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108181
  • RHEA:
  • LIGAND-RXN:





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