Difference between revisions of "TRIMETHYLLYSINE-DIOXYGENASE-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ORN-AMINOPENTANOATE-CAT-PWY ORN-AMINOPENTANOATE-CAT-PWY] == * taxonomic-range: ** [http://metacyc.org...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GABATRANSAM-RXN GABATRANSAM-RXN] == * direction: ** reversible * common-name: ** 4-aminobutyrate tr...")
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ORN-AMINOPENTANOATE-CAT-PWY ORN-AMINOPENTANOATE-CAT-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GABATRANSAM-RXN GABATRANSAM-RXN] ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-1224]
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** reversible
** [http://metacyc.org/META/NEW-IMAGE?object=tax-1239 tax-1239]
 
 
* common-name:
 
* common-name:
** l-ornithine degradation i (l-proline biosynthesis)
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** 4-aminobutyrate transaminase
== Reaction(s) found ==
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* ec-number:
* [[ORNITHINE-CYCLODEAMINASE-RXN]]
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** [http://enzyme.expasy.org/EC/2.6.1.19 ec-2.6.1.19]
== Reaction(s) not found ==
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== Reaction formula ==
All reactions of this pathways are in present
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[SUCC-S-ALD]][c]
{{#set: taxonomic-range=tax-1224|tax-1239}}
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== Gene(s) associated with this reaction  ==
{{#set: common-name=l-ornithine degradation i (l-proline biosynthesis)}}
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* Gene: [[SJ07892]]
{{#set: nb reaction found=1}}
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** Category: [[annotation]]
{{#set: completion rate=1.0}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
{{#set: nb total reaction=1}}
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== Pathway(s) ==
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* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6536]], 4-aminobutanoate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6536 PWY-6536]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6537]], 4-aminobutanoate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6537 PWY-6537]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[P181-PWY]], nicotine degradation I (pyridine pathway): [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY]
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** '''2''' reactions found over '''17''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23355 23355]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01648 R01648]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P22256 P22256]
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** [http://www.uniprot.org/uniprot/P50457 P50457]
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** [http://www.uniprot.org/uniprot/Q9UZ71 Q9UZ71]
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** [http://www.uniprot.org/uniprot/P50554 P50554]
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** [http://www.uniprot.org/uniprot/P80404 P80404]
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** [http://www.uniprot.org/uniprot/P14010 P14010]
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** [http://www.uniprot.org/uniprot/P17649 P17649]
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** [http://www.uniprot.org/uniprot/P40829 P40829]
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** [http://www.uniprot.org/uniprot/O13837 O13837]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=4-aminobutyrate transaminase}}
 +
{{#set: ec-number=ec-2.6.1.19}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=7}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:33, 27 August 2019

Reaction GABATRANSAM-RXN

  • direction:
    • reversible
  • common-name:
    • 4-aminobutyrate transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUDEG-I-PWY, GABA shunt: GLUDEG-I-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6536, 4-aminobutanoate degradation III: PWY-6536
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6537, 4-aminobutanoate degradation II: PWY-6537
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V: PWY-5022
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6535, 4-aminobutanoate degradation I: PWY-6535
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4321, L-glutamate degradation IV: PWY-4321
    • 3 reactions found over 5 reactions in the full pathway
  • P181-PWY, nicotine degradation I (pyridine pathway): P181-PWY
    • 2 reactions found over 17 reactions in the full pathway

Reconstruction information

External links