Difference between revisions of "TRIOSEPISOMERIZATION-RXN"

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(Created page with "Category:reaction == Reaction SULFATE-ADENYLYLTRANS-RXN == * direction: ** reversible * common-name: ** sulfate adenylyltransferase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction TRIOSEPISOMERIZATION-RXN == * direction: ** reversible * common-name: ** triosephosphate isomerase ** triose-phosphate isomerase * ec-number:...")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction SULFATE-ADENYLYLTRANS-RXN ==
+
== Reaction TRIOSEPISOMERIZATION-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
** sulfate adenylyltransferase
+
** triosephosphate isomerase
 +
** triose-phosphate isomerase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.7.7.4 ec-2.7.7.4]
+
** [http://enzyme.expasy.org/EC/5.3.1.1 ec-5.3.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SULFATE]][c] '''<=>''' 1 [[APS]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ09890]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ10351]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11011]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15388]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07665]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ04851]]
+
* Gene: [[SJ21027]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[DISSULFRED-PWY]], dissimilatory sulfate reduction I (to hydrogen sufide)):
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
** '''2''' reactions found over '''4''' reactions in the full pathway
+
* [[GLUCONEO-PWY]], gluconeogenesis I:
* [[P224-PWY]], dissimilatory sulfate reduction II (to thiosulfate):
+
** '''12''' reactions found over '''13''' reactions in the full pathway
** '''2''' reactions found over '''5''' reactions in the full pathway
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
* [[PWY-6683]], assimilatory sulfate reduction III:
+
** '''12''' reactions found over '''13''' reactions in the full pathway
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
* [[SULFMETII-PWY]], assimilatory sulfate reduction II:
+
** '''11''' reactions found over '''12''' reactions in the full pathway
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
* [[PWY-5340]], sulfate activation for sulfonation:
+
** '''10''' reactions found over '''11''' reactions in the full pathway
** '''2''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-1042]], glycolysis IV:
* [[PWY-5278]], sulfite oxidation III:
+
** '''9''' reactions found over '''10''' reactions in the full pathway
** '''2''' reactions found over '''2''' reactions in the full pathway
+
* [[P341-PWY]], glycolysis V (Pyrococcus):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY66-373]], sucrose degradation V (sucrose &alpha;-glucosidase):
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol:
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104918
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18136 18136]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18588 18588]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R00529 R00529]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/Q12650 Q12650]
+
** [http://www.uniprot.org/uniprot/P19118 P19118]
** [http://www.uniprot.org/uniprot/O33581 O33581]
+
** [http://www.uniprot.org/uniprot/P21820 P21820]
** [http://www.uniprot.org/uniprot/O34764 O34764]
+
** [http://www.uniprot.org/uniprot/P48501 P48501]
** [http://www.uniprot.org/uniprot/Q10600 Q10600]
+
** [http://www.uniprot.org/uniprot/P62002 P62002]
** [http://www.uniprot.org/uniprot/O67174 O67174]
+
** [http://www.uniprot.org/uniprot/O27120 O27120]
** [http://www.uniprot.org/uniprot/P21156 P21156]
+
** [http://www.uniprot.org/uniprot/P27876 P27876]
** [http://www.uniprot.org/uniprot/O23324 O23324]
+
** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6]
** [http://www.uniprot.org/uniprot/Q9JUD7 Q9JUD7]
+
** [http://www.uniprot.org/uniprot/P19583 P19583]
** [http://www.uniprot.org/uniprot/Q9PM66 Q9PM66]
+
** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2]
** [http://www.uniprot.org/uniprot/Q9JUD6 Q9JUD6]
+
** [http://www.uniprot.org/uniprot/P47721 P47721]
** [http://www.uniprot.org/uniprot/P28604 P28604]
+
** [http://www.uniprot.org/uniprot/P47670 P47670]
** [http://www.uniprot.org/uniprot/Q27128 Q27128]
+
** [http://www.uniprot.org/uniprot/P50918 P50918]
** [http://www.uniprot.org/uniprot/P23845 P23845]
+
** [http://www.uniprot.org/uniprot/P43727 P43727]
** [http://www.uniprot.org/uniprot/O43252 O43252]
+
** [http://www.uniprot.org/uniprot/Q58923 Q58923]
** [http://www.uniprot.org/uniprot/Q43170 Q43170]
+
** [http://www.uniprot.org/uniprot/O28965 O28965]
** [http://www.uniprot.org/uniprot/Q43183 Q43183]
+
** [http://www.uniprot.org/uniprot/Q59182 Q59182]
** [http://www.uniprot.org/uniprot/Q43870 Q43870]
+
** [http://www.uniprot.org/uniprot/O59536 O59536]
** [http://www.uniprot.org/uniprot/Q12555 Q12555]
+
** [http://www.uniprot.org/uniprot/P36204 P36204]
** [http://www.uniprot.org/uniprot/P08536 P08536]
+
** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31]
** [http://www.uniprot.org/uniprot/P74241 P74241]
+
** [http://www.uniprot.org/uniprot/P04828 P04828]
** [http://www.uniprot.org/uniprot/O48888 O48888]
+
** [http://www.uniprot.org/uniprot/P00943 P00943]
** [http://www.uniprot.org/uniprot/Q39595 Q39595]
+
** [http://www.uniprot.org/uniprot/P00942 P00942]
** [http://www.uniprot.org/uniprot/Q96349 Q96349]
+
** [http://www.uniprot.org/uniprot/P00940 P00940]
** [http://www.uniprot.org/uniprot/Q96541 Q96541]
+
** [http://www.uniprot.org/uniprot/P60175 P60175]
** [http://www.uniprot.org/uniprot/Q9S7D8 Q9S7D8]
+
** [http://www.uniprot.org/uniprot/P0A858 P0A858]
** [http://www.uniprot.org/uniprot/P13441 P13441]
+
** [http://www.uniprot.org/uniprot/P60174 P60174]
** [http://www.uniprot.org/uniprot/P13442 P13442]
+
** [http://www.uniprot.org/uniprot/P00941 P00941]
 +
** [http://www.uniprot.org/uniprot/P15426 P15426]
 +
** [http://www.uniprot.org/uniprot/P17751 P17751]
 +
** [http://www.uniprot.org/uniprot/P00939 P00939]
 +
** [http://www.uniprot.org/uniprot/P12863 P12863]
 +
** [http://www.uniprot.org/uniprot/P07669 P07669]
 +
** [http://www.uniprot.org/uniprot/P35144 P35144]
 +
** [http://www.uniprot.org/uniprot/P48494 P48494]
 +
** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7]
 +
** [http://www.uniprot.org/uniprot/P29613 P29613]
 +
** [http://www.uniprot.org/uniprot/P30741 P30741]
 +
** [http://www.uniprot.org/uniprot/Q01893 Q01893]
 +
** [http://www.uniprot.org/uniprot/P48499 P48499]
 +
** [http://www.uniprot.org/uniprot/P48496 P48496]
 +
** [http://www.uniprot.org/uniprot/P46226 P46226]
 +
** [http://www.uniprot.org/uniprot/P46225 P46225]
 +
** [http://www.uniprot.org/uniprot/P48492 P48492]
 +
** [http://www.uniprot.org/uniprot/Q56738 Q56738]
 +
** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5]
 +
** [http://www.uniprot.org/uniprot/P46711 P46711]
 +
** [http://www.uniprot.org/uniprot/O32757 O32757]
 +
** [http://www.uniprot.org/uniprot/O74067 O74067]
 +
** [http://www.uniprot.org/uniprot/P48491 P48491]
 
</div>
 
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
{{#set: common-name=sulfate adenylyltransferase}}
+
{{#set: common-name=triosephosphate isomerase|triose-phosphate isomerase}}
{{#set: ec-number=ec-2.7.7.4}}
+
{{#set: ec-number=ec-5.3.1.1}}
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=5}}
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=12}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction TRIOSEPISOMERIZATION-RXN

  • direction:
    • reversible
  • common-name:
    • triosephosphate isomerase
    • triose-phosphate isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUCONEO-PWY, gluconeogenesis I:
    • 12 reactions found over 13 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042, glycolysis IV:
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus):
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway
  • PWY66-373, sucrose degradation V (sucrose α-glucosidase):
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol:
    • 8 reactions found over 6 reactions in the full pathway

Reconstruction information

External links