Difference between revisions of "TRIPHOSPHATASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demeth...")
(Created page with "Category:reaction == Reaction GLUTAMINESYN-RXN == * direction: ** left-to-right * common-name: ** glutamine synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.1.2...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] ==
+
== Reaction GLUTAMINESYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** [histone-h3]-lysine-36 demethylase
+
** glutamine synthetase
** histone demethylase activity (h3-k36 specific)
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
+
** [http://enzyme.expasy.org/EC/6.3.1.2 ec-6.3.1.2]
 
* synonymous:
 
* synonymous:
** histone-lysine (h3-k36) demethylase
+
** type i glutamate--ammonia ligase
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 
** jhdm1a
 
** h3-k36-specific demethylase
 
** histone demethylase
 
** jmjc domain-containing histone demethylase 1a
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ18735]]
+
* Gene: [[SJ03939]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ05371]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08357]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ19102]]
+
* Gene: [[SJ12766]]
** Category: [[annotation]]
+
** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ00708]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ13421]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ19354]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-381]], nitrate reduction II (assimilatory):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5675]], nitrate reduction V (assimilatory):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY490-3]], nitrate reduction VI (assimilatory):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLNSYN-PWY]], L-glutamine biosynthesis I:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6964]], ammonia assimilation cycle II:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6963]], ammonia assimilation cycle I:
 +
** '''4''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16169 16169]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00253 R00253]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P15103 P15103]
 +
** [http://www.uniprot.org/uniprot/P15124 P15124]
 +
** [http://www.uniprot.org/uniprot/P15623 P15623]
 +
** [http://www.uniprot.org/uniprot/P21154 P21154]
 +
** [http://www.uniprot.org/uniprot/P45627 P45627]
 +
** [http://www.uniprot.org/uniprot/Q59982 Q59982]
 +
** [http://www.uniprot.org/uniprot/Q7M314 Q7M314]
 +
** [http://www.uniprot.org/uniprot/Q60182 Q60182]
 +
** [http://www.uniprot.org/uniprot/P04078 P04078]
 +
** [http://www.uniprot.org/uniprot/P00964 P00964]
 +
** [http://www.uniprot.org/uniprot/P22248 P22248]
 +
** [http://www.uniprot.org/uniprot/P07804 P07804]
 +
** [http://www.uniprot.org/uniprot/P13564 P13564]
 +
** [http://www.uniprot.org/uniprot/P12425 P12425]
 +
** [http://www.uniprot.org/uniprot/P19064 P19064]
 +
** [http://www.uniprot.org/uniprot/P16580 P16580]
 +
** [http://www.uniprot.org/uniprot/P10656 P10656]
 +
** [http://www.uniprot.org/uniprot/P11600 P11600]
 +
** [http://www.uniprot.org/uniprot/P0A1P6 P0A1P6]
 +
** [http://www.uniprot.org/uniprot/P0A9C5 P0A9C5]
 +
** [http://www.uniprot.org/uniprot/P00965 P00965]
 +
** [http://www.uniprot.org/uniprot/P04771 P04771]
 +
** [http://www.uniprot.org/uniprot/P04770 P04770]
 +
** [http://www.uniprot.org/uniprot/P15102 P15102]
 +
** [http://www.uniprot.org/uniprot/P10583 P10583]
 +
** [http://www.uniprot.org/uniprot/P23712 P23712]
 +
** [http://www.uniprot.org/uniprot/P15105 P15105]
 +
** [http://www.uniprot.org/uniprot/P08282 P08282]
 +
** [http://www.uniprot.org/uniprot/P08281 P08281]
 +
** [http://www.uniprot.org/uniprot/P07694 P07694]
 +
** [http://www.uniprot.org/uniprot/P09606 P09606]
 +
** [http://www.uniprot.org/uniprot/P14654 P14654]
 +
** [http://www.uniprot.org/uniprot/P14655 P14655]
 +
** [http://www.uniprot.org/uniprot/P14656 P14656]
 +
** [http://www.uniprot.org/uniprot/P22878 P22878]
 +
** [http://www.uniprot.org/uniprot/P19432 P19432]
 +
** [http://www.uniprot.org/uniprot/P15106 P15106]
 +
** [http://www.uniprot.org/uniprot/P19904 P19904]
 +
** [http://www.uniprot.org/uniprot/P14636 P14636]
 +
** [http://www.uniprot.org/uniprot/P04772 P04772]
 +
** [http://www.uniprot.org/uniprot/P09826 P09826]
 +
** [http://www.uniprot.org/uniprot/P05457 P05457]
 +
** [http://www.uniprot.org/uniprot/Q9JSU6 Q9JSU6]
 +
** [http://www.uniprot.org/uniprot/Q9PPK8 Q9PPK8]
 +
** [http://www.uniprot.org/uniprot/O66514 O66514]
 +
** [http://www.uniprot.org/uniprot/Q8X7G0 Q8X7G0]
 +
** [http://www.uniprot.org/uniprot/Q9CDL9 Q9CDL9]
 +
** [http://www.uniprot.org/uniprot/Q05650 Q05650]
 +
** [http://www.uniprot.org/uniprot/P43794 P43794]
 +
** [http://www.uniprot.org/uniprot/P31592 P31592]
 +
** [http://www.uniprot.org/uniprot/Q27747 Q27747]
 +
** [http://www.uniprot.org/uniprot/P12424 P12424]
 +
** [http://www.uniprot.org/uniprot/Q04831 Q04831]
 +
** [http://www.uniprot.org/uniprot/P24099 P24099]
 +
** [http://www.uniprot.org/uniprot/O04998 O04998]
 +
** [http://www.uniprot.org/uniprot/O04999 O04999]
 +
** [http://www.uniprot.org/uniprot/P20479 P20479]
 +
** [http://www.uniprot.org/uniprot/O75014 O75014]
 +
** [http://www.uniprot.org/uniprot/P23794 P23794]
 +
** [http://www.uniprot.org/uniprot/Q43127 Q43127]
 +
** [http://www.uniprot.org/uniprot/Q9FHR0 Q9FHR0]
 +
** [http://www.uniprot.org/uniprot/Q9C8C7 Q9C8C7]
 +
** [http://www.uniprot.org/uniprot/P28786 P28786]
 +
** [http://www.uniprot.org/uniprot/Q02154 Q02154]
 +
** [http://www.uniprot.org/uniprot/Q05542 Q05542]
 +
** [http://www.uniprot.org/uniprot/Q42624 Q42624]
 +
** [http://www.uniprot.org/uniprot/P43518 P43518]
 +
** [http://www.uniprot.org/uniprot/P52783 P52783]
 +
** [http://www.uniprot.org/uniprot/Q43759 Q43759]
 +
** [http://www.uniprot.org/uniprot/P38559 P38559]
 +
** [http://www.uniprot.org/uniprot/P38560 P38560]
 +
** [http://www.uniprot.org/uniprot/P38561 P38561]
 +
** [http://www.uniprot.org/uniprot/P38562 P38562]
 +
** [http://www.uniprot.org/uniprot/P38563 P38563]
 +
** [http://www.uniprot.org/uniprot/P25462 P25462]
 +
** [http://www.uniprot.org/uniprot/Q42625 Q42625]
 +
** [http://www.uniprot.org/uniprot/P46410 P46410]
 +
** [http://www.uniprot.org/uniprot/Q42802 Q42802]
 +
** [http://www.uniprot.org/uniprot/Q42623 Q42623]
 +
** [http://www.uniprot.org/uniprot/Q53045 Q53045]
 +
** [http://www.uniprot.org/uniprot/P32288 P32288]
 +
** [http://www.uniprot.org/uniprot/Q43066 Q43066]
 +
** [http://www.uniprot.org/uniprot/Q59195 Q59195]
 +
** [http://www.uniprot.org/uniprot/P51118 P51118]
 +
** [http://www.uniprot.org/uniprot/P51119 P51119]
 +
** [http://www.uniprot.org/uniprot/Q42950 Q42950]
 +
** [http://www.uniprot.org/uniprot/Q42951 Q42951]
 +
** [http://www.uniprot.org/uniprot/Q07939 Q07939]
 +
** [http://www.uniprot.org/uniprot/Q43760 Q43760]
 +
** [http://www.uniprot.org/uniprot/Q42688 Q42688]
 +
** [http://www.uniprot.org/uniprot/Q42689 Q42689]
 +
** [http://www.uniprot.org/uniprot/O22504 O22504]
 +
** [http://www.uniprot.org/uniprot/O22505 O22505]
 +
** [http://www.uniprot.org/uniprot/O22506 O22506]
 +
** [http://www.uniprot.org/uniprot/Q59972 Q59972]
 +
** [http://www.uniprot.org/uniprot/Q9UWN1 Q9UWN1]
 +
** [http://www.uniprot.org/uniprot/Q9RDW7 Q9RDW7]
 +
** [http://www.uniprot.org/uniprot/P43386 P43386]
 +
** [http://www.uniprot.org/uniprot/P0A040 P0A040]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=[histone-h3]-lysine-36 demethylase|histone demethylase activity (h3-k36 specific)}}
+
{{#set: common-name=glutamine synthetase}}
{{#set: ec-number=ec-1.14.11}}
+
{{#set: ec-number=ec-6.3.1.2}}
{{#set: synonymous=histone-lysine (h3-k36) demethylase|jmjc domain-containing histone demethylase 1a|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|h3-k36-specific demethylase|jhdm1a|histone demethylase}}
+
{{#set: synonymous=type i glutamate--ammonia ligase}}
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=3}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=7}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:42, 18 December 2020

Reaction GLUTAMINESYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutamine synthetase
  • ec-number:
  • synonymous:
    • type i glutamate--ammonia ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-381, nitrate reduction II (assimilatory):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5675, nitrate reduction V (assimilatory):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY490-3, nitrate reduction VI (assimilatory):
    • 3 reactions found over 4 reactions in the full pathway
  • GLNSYN-PWY, L-glutamine biosynthesis I:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6964, ammonia assimilation cycle II:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6963, ammonia assimilation cycle I:
    • 4 reactions found over 2 reactions in the full pathway

Reconstruction information

External links