Difference between revisions of "TRYPSYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-17127 == * direction: ** left-to-right * common-name: ** lipoate-protein ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.1.20 ec-...")
(Created page with "Category:reaction == Reaction RXN-16113 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.134 ec-4.2.1.134] == Reaction formula == * 1 ...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-17127 ==
+
== Reaction RXN-16113 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** lipoate-protein ligase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/6.3.1.20 ec-6.3.1.20]
+
** [http://enzyme.expasy.org/EC/4.2.1.134 ec-4.2.1.134]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[LIPOIC-ACID]][c] '''+''' 1 [[Lipoyl-Protein-L-Lysine]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-17367]][c] '''=>''' 1 [[CPD-17368]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ04393]]
+
* Gene: [[SJ06882]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ06657]]
+
* Gene: [[SJ00783]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ03663]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ11692]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase):
 +
** '''8''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7728]], (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase):
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=49289 49289]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=lipoate-protein ligase}}
+
{{#set: ec-number=ec-4.2.1.134}}
{{#set: ec-number=ec-6.3.1.20}}
+
{{#set: nb gene associated=2}}
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=2}}
{{#set: nb pathway associated=0}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:20, 14 January 2021

Reaction RXN-16113

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7726, (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase):
    • 8 reactions found over 13 reactions in the full pathway
  • PWY-7728, (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis II (4-desaturase):
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links