Difference between revisions of "TRYPTOPHAN--TRNA-LIGASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-11592 == * direction: ** left-to-right * common-name: ** 23s rrna m3ψ1915 methyltransferase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction RXN-7979 == * direction: ** left-to-right * synonymous: ** zea-epoxidase == Reaction formula == * 1 CPD1F-131[c] '''+''' 1 OXYGEN-MOLEC...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-11592 ==
+
== Reaction RXN-7979 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
+
* synonymous:
** 23s rrna m3ψ1915 methyltransferase
+
** zea-epoxidase
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.1.1.177 ec-2.1.1.177]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[23S-rRNA-pseudouridine1915]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[23S-rRNA-N3-methylpseudouridine1915]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD1F-131]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-133]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ14928]]
+
* Gene: [[SJ1973]]
** Category: [[annotation]]
+
** Category: [[manual]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5174]], capsanthin and capsorubin biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5945]], violaxanthin, antheraxanthin and zeaxanthin interconversion:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of antheraxanthin into violaxanthin (first cycle of xanthophylls)
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42753 42753]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14938 14938]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07200 R07200]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=23s rrna m3ψ1915 methyltransferase}}
+
{{#set: synonymous=zea-epoxidase}}
{{#set: ec-number=ec-2.1.1.177}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=transformation of antheraxanthin into violaxanthin (first cycle of xanthophylls)}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=sjap}}

Revision as of 19:07, 14 January 2021

Reaction RXN-7979

  • direction:
    • left-to-right
  • synonymous:
    • zea-epoxidase

Reaction formula

Gene(s) associated with this reaction

  • Gene: SJ1973
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)

Pathway(s)

  • PWY-5174, capsanthin and capsorubin biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5945, violaxanthin, antheraxanthin and zeaxanthin interconversion:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

  • category: manual; source: sjap; tool: curation; comment: transformation of antheraxanthin into violaxanthin (first cycle of xanthophylls)

External links