Difference between revisions of "TRYPTOPHAN--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction HOMSUCTRAN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.46 ec-2.3.1.46] == Reaction formula == * 1...")
(Created page with "Category:reaction == Reaction RXN-13001 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.134 ec-4.2.1.134] == Reaction formula == * 1 ...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction HOMSUCTRAN-RXN ==
+
== Reaction RXN-13001 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.3.1.46 ec-2.3.1.46]
+
** [http://enzyme.expasy.org/EC/4.2.1.134 ec-4.2.1.134]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[HOMO-SER]][c] '''+''' 1 [[SUC-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c]
+
* 1 [[CPD-14419]][c] '''=>''' 1 [[CPD-14420]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ00783]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06882]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
+
* [[PWY-7619]], juniperonate biosynthesis:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7602]], icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes):
 
** '''4''' reactions found over '''7''' reactions in the full pathway
 
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
+
* METANETX-RXN : MNXR117847
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22009 22009]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01777 R01777]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q9PLV2 Q9PLV2]
 
** [http://www.uniprot.org/uniprot/Q9CEC5 Q9CEC5]
 
** [http://www.uniprot.org/uniprot/P07623 P07623]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: ec-number=ec-2.3.1.46}}
+
{{#set: ec-number=ec-4.2.1.134}}
{{#set: nb gene associated=0}}
+
{{#set: nb gene associated=2}}
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pathwaytools}}
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:40, 15 March 2021

Reaction RXN-13001

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7619, juniperonate biosynthesis:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7724, icosapentaenoate biosynthesis III (8-desaturase, mammals):
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7602, icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes):
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117847