Difference between revisions of "Workflow"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOTHENATE-KIN-RXN PANTOTHENATE-KIN-RXN] == * direction: ** left-to-right * common-name: ** panto...")
(Created page with "=Workflow command history= ==Command sequence== ==Downloads== You can download the command log file here")
 
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[[Category:reaction]]
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=Workflow command history=
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOTHENATE-KIN-RXN PANTOTHENATE-KIN-RXN] ==
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* direction:
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==Command sequence==
** left-to-right
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==Downloads==
* common-name:
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You can download the [[MEDIA:log.txt|command log file here]]
** pantothenate kinase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.7.1.33 ec-2.7.1.33]
 
* synonymous:
 
** type iii pantothenate kinase
 
== Reaction formula ==
 
* 1 [[ATP]][c] '''+''' 1 [[PANTOTHENATE]][c] '''=>''' 1 [[4-P-PANTOTHENATE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
* Gene: [[SJ11632]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ11571]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
* [[PWY-3961]], phosphopantothenate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3961 PWY-3961]
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
* [[PANTO-PWY]], phosphopantothenate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PANTO-PWY PANTO-PWY]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[COA-PWY-1]], superpathway of coenzyme A biosynthesis III (mammals): [http://metacyc.org/META/NEW-IMAGE?object=COA-PWY-1 COA-PWY-1]
 
** '''2''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16374 16374]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03018 R03018]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P0A6I3 P0A6I3]
 
** [http://www.uniprot.org/uniprot/Q9CFM3 Q9CFM3]
 
** [http://www.uniprot.org/uniprot/P44793 P44793]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=pantothenate kinase}}
 
{{#set: ec-number=ec-2.7.1.33}}
 
{{#set: synonymous=type iii pantothenate kinase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:18, 18 March 2021

Workflow command history

Command sequence

Downloads

You can download the command log file here