Difference between revisions of "5.99.1.2-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * common name: ** succinyl-CoA synthetase * ec number: ** [http:/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * common name: ** topoisomerase * ec number: ** [http://enzyme.expasy...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
 
* common name:
 
* common name:
−
** succinyl-CoA synthetase
+
** topoisomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
+
** [http://enzyme.expasy.org/EC/5.99.1.2 EC-5.99.1.2]
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
−
** Succinate thiokinase
 
−
** succinyl CoA synthesis
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SUC]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[SUC-COA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 succinate[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''<=>''' 1 succinyl-CoA[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
+
** 1 a negatively supercoiled DNA[c] '''<=>''' 1 a relaxed DNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN20568_c0_g1_i2]]
+
* Gene: [[DN22608_c0_g1_i2]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN31821_c0_g1_i1]]
+
* Gene: [[DN18627_c0_g1_i2]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN18627_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN22608_c0_g1_i6]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN22608_c0_g1_i7]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
−
** '''5''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
−
** '''11''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
 
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 
−
** '''4''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
−
** '''6''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''9''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 
−
** '''4''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
 
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 55: Line 38:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O28098 O28098]
+
** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
−
** [http://www.uniprot.org/uniprot/P53594 P53594]
+
** [http://www.uniprot.org/uniprot/Q07050 Q07050]
−
** [http://www.uniprot.org/uniprot/O28733 O28733]
+
** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
−
** [http://www.uniprot.org/uniprot/P45101 P45101]
+
** [http://www.uniprot.org/uniprot/Q59046 Q59046]
−
** [http://www.uniprot.org/uniprot/P45102 P45102]
+
** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
−
** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
+
** [http://www.uniprot.org/uniprot/P47368 P47368]
−
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
+
** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
−
** [http://www.uniprot.org/uniprot/O26663 O26663]
+
** [http://www.uniprot.org/uniprot/P43704 P43704]
−
** [http://www.uniprot.org/uniprot/P80886 P80886]
+
** [http://www.uniprot.org/uniprot/P43012 P43012]
−
** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
+
** [http://www.uniprot.org/uniprot/P0A620 P0A620]
−
** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
+
** [http://www.uniprot.org/uniprot/P04786 P04786]
−
** [http://www.uniprot.org/uniprot/P80865 P80865]
+
** [http://www.uniprot.org/uniprot/P13099 P13099]
−
** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
+
** [http://www.uniprot.org/uniprot/P06612 P06612]
−
** [http://www.uniprot.org/uniprot/O67729 O67729]
+
** [http://www.uniprot.org/uniprot/P11387 P11387]
−
** [http://www.uniprot.org/uniprot/O67546 O67546]
+
** [http://www.uniprot.org/uniprot/P07799 P07799]
−
** [http://www.uniprot.org/uniprot/P53593 P53593]
+
** [http://www.uniprot.org/uniprot/P93119 P93119]
−
** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
+
** [http://www.uniprot.org/uniprot/O13463 O13463]
−
** [http://www.uniprot.org/uniprot/P0A836 P0A836]
+
** [http://www.uniprot.org/uniprot/Q94705 Q94705]
−
** [http://www.uniprot.org/uniprot/O82662 O82662]
+
** [http://www.uniprot.org/uniprot/Q04750 Q04750]
−
{{#set: common name=succinyl-CoA synthetase}}
+
** [http://www.uniprot.org/uniprot/P14294 P14294]
−
{{#set: ec number=EC-6.2.1.5}}
+
** [http://www.uniprot.org/uniprot/P30181 P30181]
 +
** [http://www.uniprot.org/uniprot/P34185 P34185]
 +
** [http://www.uniprot.org/uniprot/P30189 P30189]
 +
** [http://www.uniprot.org/uniprot/P40114 P40114]
 +
** [http://www.uniprot.org/uniprot/P41511 P41511]
 +
** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
 +
** [http://www.uniprot.org/uniprot/Q26024 Q26024]
 +
** [http://www.uniprot.org/uniprot/Q27529 Q27529]
 +
** [http://www.uniprot.org/uniprot/P41512 P41512]
 +
** [http://www.uniprot.org/uniprot/O24307 O24307]
 +
** [http://www.uniprot.org/uniprot/P71196 P71196]
 +
** [http://www.uniprot.org/uniprot/O70157 O70157]
 +
** [http://www.uniprot.org/uniprot/O60126 O60126]
 +
** [http://www.uniprot.org/uniprot/O61660 O61660]
 +
{{#set: common name=topoisomerase}}
 +
{{#set: ec number=EC-5.99.1.2}}
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
+
{{#set: gene associated=DN22608_c0_g1_i2|DN18627_c0_g1_i2|DN18627_c0_g1_i1|DN22608_c0_g1_i6|DN22608_c0_g1_i7}}
−
{{#set: gene associated=DN20568_c0_g1_i2|DN31821_c0_g1_i1}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-5392|PWY66-398|PWY-5538|PWY-7384|P23-PWY|PWY-5913|PWY-6969|P42-PWY|TCA|PWY-5690|PWY-6728|PWY-5537}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:20, 15 January 2021

Reaction 5.99.1.2-RXN

  • common name:
    • topoisomerase
  • ec number:
  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=5.99.1.2-RXN&oldid=8059"