Difference between revisions of "GCVP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R147-RXN R147-RXN] == * common name: ** 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidored...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] == * common name: ** glycine decarboxylase * ec number: ** [http://enzyme.expasy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R147-RXN R147-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
 
* common name:
 
* common name:
−
** 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidoreductase (formate-forming)
+
** glycine decarboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.13.11.54 EC-1.13.11.54]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-85]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-479]][c] '''+''' 1 [[FORMATE]][c]
+
** 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one[c] '''+''' 1 oxygen[c] '''=>''' 1 H+[c] '''+''' 1 4-(methylsulfanyl)-2-oxobutanoate[c] '''+''' 1 formate[c]
+
** 1 glycine[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''<=>''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN19196_c0_g1_i1]]
+
* Gene: [[DN29272_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN23056_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-4361]], S-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4361 PWY-4361]
+
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
+
** '''2''' reactions found over '''NA''' reactions in the full pathway
 +
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
 +
** '''3''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24505 24505]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24307 24307]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07364 R07364]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
−
{{#set: common name=1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidoreductase (formate-forming)}}
+
* UNIPROT:
−
{{#set: ec number=EC-1.13.11.54}}
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
−
{{#set: gene associated=DN19196_c0_g1_i1}}
+
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
−
{{#set: in pathway=PWY-4361}}
+
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
 +
** [http://www.uniprot.org/uniprot/P23378 P23378]
 +
** [http://www.uniprot.org/uniprot/P33195 P33195]
 +
** [http://www.uniprot.org/uniprot/O80988 O80988]
 +
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
 +
** [http://www.uniprot.org/uniprot/O32915 O32915]
 +
** [http://www.uniprot.org/uniprot/O22575 O22575]
 +
{{#set: common name=glycine decarboxylase}}
 +
{{#set: ec number=EC-1.4.4.2}}
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: gene associated=DN29272_c0_g1_i1|DN23056_c0_g1_i1}}
 +
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:20, 15 January 2021

Reaction GCVP-RXN

  • common name:
    • glycine decarboxylase
  • ec number:
  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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