Difference between revisions of "RXN-9532"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5260 RXN0-5260] == * common name: ** sn-glycerol 3-phosphate:ubiquinone oxidoreductase ** aero...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9532 RXN-9532] == * common name: ** 3-oxo-dodecanoyl-[acyl-carrier protein] reductase ** (R)-3-...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5260 RXN0-5260] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9532 RXN-9532] ==
 
* common name:
 
* common name:
−
** sn-glycerol 3-phosphate:ubiquinone oxidoreductase
+
** 3-oxo-dodecanoyl-[acyl-carrier protein] reductase
−
** aerobic glycerol 3-phosphate dehydrogenase
+
** (R)-3-hydroxydodecanoyl-[acp] reductase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.5.3 EC-1.1.5.3]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
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== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Ubiquinones]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
+
** 1 [[3-oxo-dodecanoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[R-3-hydroxydodecanoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a ubiquinone[c] '''+''' 1 sn-glycerol 3-phosphate[c] '''=>''' 1 an ubiquinol[c] '''+''' 1 glycerone phosphate[c]
+
** 1 a 3-oxo-dodecanoyl-[acp][c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 a (3R)-3-hydroxydodecanoyl-[acp][c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN15480_c0_g1_i3]]
+
* Gene: [[DN20375_c0_g1_i4]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN3979_c0_g1_i1]]
+
* Gene: [[DN20375_c0_g1_i2]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN31685_c0_g1_i1]]
+
* Gene: [[DN20375_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN13183_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN11444_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN25390_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN18128_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN6632_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1561]], glycerol-3-phosphate to cytochrome bo oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1561 PWY0-1561]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
+
** '''27''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY0-1584]], nitrate reduction X (dissimilatory, periplasmic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1584 PWY0-1584]
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
−
** '''3''' reactions found over '''NA''' reactions in the full pathway
+
** '''27''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 37: Line 54:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common name=3-oxo-dodecanoyl-[acyl-carrier protein] reductase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28756 28756]
+
{{#set: common name=(R)-3-hydroxydodecanoyl-[acp] reductase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-2.3.1.86}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00849 R00849]
+
{{#set: ec number=EC-2.3.1.85}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R08657 R08657]
+
{{#set: ec number=EC-1.1.1.100}}
−
{{#set: common name=sn-glycerol 3-phosphate:ubiquinone oxidoreductase}}
 
−
{{#set: common name=aerobic glycerol 3-phosphate dehydrogenase}}
 
−
{{#set: ec number=EC-1.1.5.3}}
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN15480_c0_g1_i3|DN3979_c0_g1_i1|DN31685_c0_g1_i1}}
+
{{#set: gene associated=DN20375_c0_g1_i4|DN20375_c0_g1_i2|DN20375_c0_g1_i1|DN13183_c0_g1_i1|DN11444_c0_g1_i1|DN25390_c0_g1_i1|DN18128_c0_g1_i1|DN6632_c0_g1_i1}}
−
{{#set: in pathway=PWY0-1561|PWY0-1584}}
+
{{#set: in pathway=PWY-5971|PWY-5994}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:21, 15 January 2021

Reaction RXN-9532

  • common name:
    • 3-oxo-dodecanoyl-[acyl-carrier protein] reductase
    • (R)-3-hydroxydodecanoyl-[acp] reductase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 27 reactions found over NA reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 27 reactions found over NA reactions in the full pathway

Reconstruction information

External links

Property "Common name" (as page type) with input value "3-oxo-dodecanoyl-[acyl-carrier protein] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Common name" (as page type) with input value "(R)-3-hydroxydodecanoyl-[acp] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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