Difference between revisions of "RXN-15131"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] == * common name: ** isocitrate lyase * ec number: ** [http://en...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15131 RXN-15131] == * common name: ** L-cystathione β-lyase * direction: ** LEFT-TO-RIGHT...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15131 RXN-15131] ==
 
* common name:
 
* common name:
−
** isocitrate lyase
+
** L-cystathione β-lyase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/4.1.3.1 EC-4.1.3.1]
 
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
+
** 1 [[L-CYSTATHIONINE]][c] '''=>''' 1 [[2-AMINOACRYLATE]][c] '''+''' 1 [[HOMO-CYS]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-threo-isocitrate[c] '''<=>''' 1 glyoxylate[c] '''+''' 1 succinate[c]
+
** 1 L-cystathionine[c] '''=>''' 1 2-aminoprop-2-enoate[c] '''+''' 1 L-homocysteine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN14323_c0_g1_i3]]
+
* Gene: [[DN12139_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
+
* [[PWY-702]], L-methionine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-702 PWY-702]
−
** '''5''' reactions found over '''NA''' reactions in the full pathway
+
** '''2''' reactions found over '''NA''' reactions in the full pathway
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
+
** '''4''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
* [[PWY-801]], homocysteine and cysteine interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-801 PWY-801]
−
** '''9''' reactions found over '''NA''' reactions in the full pathway
+
** '''2''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 33: Line 31:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13248 13248]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43021 43021]
−
* LIGAND-RXN:
+
{{#set: common name=L-cystathione &beta;-lyase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* PIR:
+
{{#set: gene associated=DN12139_c0_g1_i1}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
+
{{#set: in pathway=PWY-702|HOMOSER-METSYN-PWY|PWY-801}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P28467 P28467]
 
−
** [http://www.uniprot.org/uniprot/P42449 P42449]
 
−
** [http://www.uniprot.org/uniprot/P20699 P20699]
 
−
** [http://www.uniprot.org/uniprot/O13439 O13439]
 
−
** [http://www.uniprot.org/uniprot/P28299 P28299]
 
−
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
 
−
** [http://www.uniprot.org/uniprot/P46831 P46831]
 
−
** [http://www.uniprot.org/uniprot/O24588 O24588]
 
−
** [http://www.uniprot.org/uniprot/P49297 P49297]
 
−
** [http://www.uniprot.org/uniprot/P45456 P45456]
 
−
** [http://www.uniprot.org/uniprot/P45457 P45457]
 
−
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
 
−
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
 
−
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
 
−
** [http://www.uniprot.org/uniprot/P28240 P28240]
 
−
** [http://www.uniprot.org/uniprot/P20014 P20014]
 
−
** [http://www.uniprot.org/uniprot/P17069 P17069]
 
−
** [http://www.uniprot.org/uniprot/P15479 P15479]
 
−
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
 
−
** [http://www.uniprot.org/uniprot/P25248 P25248]
 
−
{{#set: common name=isocitrate lyase}}
 
−
{{#set: ec number=EC-4.1.3.1}}
 
−
{{#set: direction=REVERSIBLE}}
 
−
{{#set: gene associated=DN14323_c0_g1_i3}}
 
−
{{#set: in pathway=GLYOXYLATE-BYPASS|P105-PWY|PWY-6969}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:21, 15 January 2021

Reaction RXN-15131

  • common name:
    • L-cystathione β-lyase
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-702, L-methionine biosynthesis II: PWY-702
    • 2 reactions found over NA reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I: HOMOSER-METSYN-PWY
    • 4 reactions found over NA reactions in the full pathway
  • PWY-801, homocysteine and cysteine interconversion: PWY-801
    • 2 reactions found over NA reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=RXN-15131&oldid=8435"