Difference between revisions of "RIB5PISOM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-NUCLEOTID-RXN 5-NUCLEOTID-RXN] == * common name: ** pyrimidine nucleotidase * ec number: ** [http...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * common name: ** ribose-5-phosphate isomerase A * ec number: ** [h...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-NUCLEOTID-RXN 5-NUCLEOTID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] ==
 
* common name:
 
* common name:
−
** pyrimidine nucleotidase
+
** ribose-5-phosphate isomerase A
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/5.3.1.6 EC-5.3.1.6]
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Ribonucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Ribonucleosides]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a ribonucleoside 5'-monophosphate[c] '''+''' 1 H2O[c] '''=>''' 1 a ribonucleoside[c] '''+''' 1 phosphate[c]
+
** 1 D-ribose 5-phosphate[c] '''<=>''' 1 D-ribulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN11312_c0_g1_i1]]
+
* Gene: [[DN8337_c0_g1_i1]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN31244_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN16240_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''12''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''9''' reactions found over '''NA''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 +
** '''4''' reactions found over '''NA''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''9''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''6''' reactions found over '''NA''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''9''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12485 12485]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14660 14660]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07297 R07297]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06196 P06196]
+
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
−
** [http://www.uniprot.org/uniprot/P21588 P21588]
+
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
−
** [http://www.uniprot.org/uniprot/O34313 O34313]
+
** [http://www.uniprot.org/uniprot/P44725 P44725]
−
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
+
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
−
** [http://www.uniprot.org/uniprot/O29385 O29385]
+
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
−
** [http://www.uniprot.org/uniprot/P44569 P44569]
+
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
−
** [http://www.uniprot.org/uniprot/O83142 O83142]
+
** [http://www.uniprot.org/uniprot/P37351 P37351]
−
** [http://www.uniprot.org/uniprot/P49902 P49902]
+
** [http://www.uniprot.org/uniprot/P74234 P74234]
−
** [http://www.uniprot.org/uniprot/P22848 P22848]
+
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
−
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
+
{{#set: common name=ribose-5-phosphate isomerase A}}
−
** [http://www.uniprot.org/uniprot/P21589 P21589]
+
{{#set: ec number=EC-5.3.1.6}}
−
** [http://www.uniprot.org/uniprot/P29240 P29240]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P07024 P07024]
+
{{#set: gene associated=DN8337_c0_g1_i1}}
−
{{#set: common name=pyrimidine nucleotidase}}
+
{{#set: in pathway=CALVIN-PWY|PWY-5723|NONOXIPENT-PWY|P124-PWY|PWY-1861|P185-PWY}}
−
{{#set: ec number=EC-3.1.3.5}}
 
−
{{#set: direction=LEFT-TO-RIGHT}}
 
−
{{#set: gene associated=DN11312_c0_g1_i1|DN31244_c0_g1_i1|DN16240_c0_g1_i1}}
 
−
{{#set: in pathway=}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction RIB5PISOM-RXN

  • common name:
    • ribose-5-phosphate isomerase A
  • ec number:
  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-ribose 5-phosphate[c] <=> 1 D-ribulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 12 reactions found over NA reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 9 reactions found over NA reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 4 reactions found over NA reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 9 reactions found over NA reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle): PWY-1861
    • 6 reactions found over NA reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 9 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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