Difference between revisions of "RXN0-2161"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14284 RXN-14284] == * common name: ** maltodextrin phosphorylase * ec number: ** [http://enzyme...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * common name: ** L-serine:tRNASec ligase (AMP-forming) * ec number: ** [ht...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14284 RXN-14284] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
 
* common name:
 
* common name:
−
** maltodextrin phosphorylase
+
** L-serine:tRNASec ligase (AMP-forming)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.1 EC-2.4.1.1]
+
** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 11: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Pi]][c] '''+''' 1 [[MALTOPENTAOSE]][c] '''=>''' 1 [[MALTOTETRAOSE]][c] '''+''' 1 [[GLC-1-P]][c]
+
** 1 [[tRNA-Sec]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 phosphate[c] '''+''' 1 maltopentaose[c] '''=>''' 1 maltotetraose[c] '''+''' 1 α-D-glucopyranose 1-phosphate[c]
+
** 1 a tRNAsec[c] '''+''' 1 L-serine[c] '''+''' 1 ATP[c] '''=>''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN8913_c0_g1_i2]]
+
* Gene: [[DN13768_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN18971_c0_g1_i1]]
+
* Gene: [[DN12238_c0_g1_i3]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN8913_c0_g1_i1]]
+
* Gene: [[DN21553_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN15931_c0_g1_i1]]
+
* Gene: [[DN12238_c0_g1_i2]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN16474_c0_g2_i1]]
+
* Gene: [[DN12238_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN13823_c0_g1_i1]]
+
* Gene: [[DN21553_c0_g1_i6]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN22830_c0_g1_i3]]
+
* Gene: [[DN21454_c0_g2_i3]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN22830_c0_g1_i1]]
+
* Gene: [[DN21553_c0_g1_i4]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN21046_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 50: Line 51:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=maltodextrin phosphorylase}}
+
* RHEA:
−
{{#set: ec number=EC-2.4.1.1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42581 42581]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
 +
{{#set: common name=L-serine:tRNASec ligase (AMP-forming)}}
 +
{{#set: ec number=EC-6.1.1.11}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN8913_c0_g1_i2|DN18971_c0_g1_i1|DN8913_c0_g1_i1|DN15931_c0_g1_i1|DN16474_c0_g2_i1|DN13823_c0_g1_i1|DN22830_c0_g1_i3|DN22830_c0_g1_i1|DN21046_c0_g1_i1}}
+
{{#set: gene associated=DN13768_c0_g1_i1|DN12238_c0_g1_i3|DN21553_c0_g1_i1|DN12238_c0_g1_i2|DN12238_c0_g1_i1|DN21553_c0_g1_i6|DN21454_c0_g2_i3|DN21553_c0_g1_i4}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=PWY0-901|PWY-6281}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction RXN0-2161

  • common name:
    • L-serine:tRNASec ligase (AMP-forming)
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAsec[c] + 1 L-serine[c] + 1 ATP[c] => 1 an L-seryl-[tRNAsec][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 1 reactions found over NA reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 1 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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