Difference between revisions of "DIAMINOPIMEPIM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] == * common name: ** β-ketomeristoyl-[acp] synthase * ec number: ** [http:/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] == * common name: ** diaminopimelate epimerase * ec number:...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] ==
 
* common name:
 
* common name:
−
** β-ketomeristoyl-[acp] synthase
+
** diaminopimelate epimerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 EC-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/5.1.1.7 EC-5.1.1.7]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
−
** β-ketoacyl-ACP synthase I
 
−
** β-ketoacyl-acyl carrier protein synthetase
 
−
** β-ketoacyl-[acyl carrier protein] synthase
 
−
** condensing enzyme
 
−
** β-ketoacyl acyl carrier protein synthase
 
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
−
** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ACP]][c]
+
** 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a dodecanoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 CO2[c] '''+''' 1 a holo-[acyl-carrier protein][c]
+
** 1 L,L-diaminopimelate[c] '''<=>''' 1 meso-diaminopimelate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN20375_c0_g1_i2]]
+
* Gene: [[DN13784_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN18128_c0_g1_i1]]
+
* Gene: [[DN13784_c0_g1_i3]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN25390_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN13183_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN20375_c0_g1_i4]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN20375_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN6632_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN11444_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
−
** '''27''' reactions found over '''NA''' reactions in the full pathway
+
** '''6''' reactions found over '''NA''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
 +
** '''6''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
 +
** '''7''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 59: Line 35:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=&beta;-ketomeristoyl-[acp] synthase}}
+
* RHEA:
−
{{#set: ec number=EC-2.3.1.179}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15396 15396]
−
{{#set: ec number=EC-2.3.1.41}}
+
* LIGAND-RXN:
−
{{#set: ec number=EC-2.3.1.85}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
−
{{#set: ec number=EC-2.3.1.86}}
+
* UNIPROT:
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
−
{{#set: common name=&beta;-ketoacyl-ACP synthase I|&beta;-ketoacyl-acyl carrier protein synthetase|&beta;-ketoacyl-[acyl carrier protein] synthase|condensing enzyme|&beta;-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)}}
+
** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
−
{{#set: gene associated=DN20375_c0_g1_i2|DN18128_c0_g1_i1|DN25390_c0_g1_i1|DN13183_c0_g1_i1|DN20375_c0_g1_i4|DN20375_c0_g1_i1|DN6632_c0_g1_i1|DN11444_c0_g1_i1}}
+
** [http://www.uniprot.org/uniprot/P44859 P44859]
−
{{#set: in pathway=PWY-5971}}
+
** [http://www.uniprot.org/uniprot/Q58519 Q58519]
 +
** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
 +
** [http://www.uniprot.org/uniprot/Q51564 Q51564]
 +
** [http://www.uniprot.org/uniprot/P46814 P46814]
 +
** [http://www.uniprot.org/uniprot/O05322 O05322]
 +
{{#set: common name=diaminopimelate epimerase}}
 +
{{#set: ec number=EC-5.1.1.7}}
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: gene associated=DN13784_c0_g1_i1|DN13784_c0_g1_i3}}
 +
{{#set: in pathway=PWY-2941|DAPLYSINESYN-PWY|PWY-5097}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction DIAMINOPIMEPIM-RXN

  • common name:
    • diaminopimelate epimerase
  • ec number:
  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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