Difference between revisions of "2.8.1.6-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] == * common name: ** 2,3-dihydroxy-isovale...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == * common name: ** biotin synthase * ec number: ** [http://enzyme.expasy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] ==
 
* common name:
 
* common name:
−
** 2,3-dihydroxy-isovalerate dehydratase
+
** biotin synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.9 EC-4.2.1.9]
+
** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 11: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-13357]][c] '''=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c]
+
** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (2R)-2,3-dihydroxy-3-methylbutanoate[c] '''=>''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c]
+
** 2 S-adenosyl-L-methionine[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 1 dethiobiotin[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 1 an unsulfurated [sulfur carrier][c] '''+''' 2 L-methionine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 biotin[c] '''+''' 2 5'-deoxyadenosine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN372_c0_g1_i1]]
+
* Gene: [[DN33379_c0_g1_i1]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN29940_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN19316_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN4956_c0_g2_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
+
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
−
** '''4''' reactions found over '''NA''' reactions in the full pathway
+
** '''1''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7111 PWY-7111]
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
−
** '''3''' reactions found over '''NA''' reactions in the full pathway
+
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 40: Line 31:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24810 24810]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04441 R04441]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P55186 P55186]
+
** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
−
** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
+
** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
−
** [http://www.uniprot.org/uniprot/P05791 P05791]
+
** [http://www.uniprot.org/uniprot/P53557 P53557]
−
** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
+
** [http://www.uniprot.org/uniprot/O67104 O67104]
−
** [http://www.uniprot.org/uniprot/P44851 P44851]
+
** [http://www.uniprot.org/uniprot/P44987 P44987]
−
** [http://www.uniprot.org/uniprot/Q02139 Q02139]
+
** [http://www.uniprot.org/uniprot/Q58692 Q58692]
−
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
+
** [http://www.uniprot.org/uniprot/P0A506 P0A506]
−
** [http://www.uniprot.org/uniprot/P39522 P39522]
+
** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
−
{{#set: common name=2,3-dihydroxy-isovalerate dehydratase}}
+
** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
−
{{#set: ec number=EC-4.2.1.9}}
+
** [http://www.uniprot.org/uniprot/P46396 P46396]
 +
** [http://www.uniprot.org/uniprot/Q47862 Q47862]
 +
** [http://www.uniprot.org/uniprot/P19206 P19206]
 +
** [http://www.uniprot.org/uniprot/P32451 P32451]
 +
** [http://www.uniprot.org/uniprot/P54967 P54967]
 +
** [http://www.uniprot.org/uniprot/P46715 P46715]
 +
** [http://www.uniprot.org/uniprot/P73538 P73538]
 +
** [http://www.uniprot.org/uniprot/P12996 P12996]
 +
** [http://www.uniprot.org/uniprot/O59778 O59778]
 +
{{#set: common name=biotin synthase}}
 +
{{#set: ec number=EC-2.8.1.6}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN372_c0_g1_i1|DN29940_c0_g1_i1|DN19316_c0_g1_i1|DN4956_c0_g2_i1}}
+
{{#set: gene associated=DN33379_c0_g1_i1}}
−
{{#set: in pathway=VALSYN-PWY|PWY-7111}}
+
{{#set: in pathway=PWY-7380|PWY0-1507}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction 2.8.1.6-RXN

  • common name:
    • biotin synthase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
    • 1 reactions found over NA reactions in the full pathway
  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
    • 1 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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