Difference between revisions of "GDPKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.7.7.2-RXN 1.7.7.2-RXN] == * common name: ** ferredoxin--nitrate reductase * ec number: ** [http:/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] == * common name: ** GDP kinase * ec number: ** [http://enzyme.expasy.org/EC...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.7.7.2-RXN 1.7.7.2-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] ==
 
* common name:
 
* common name:
−
** ferredoxin--nitrate reductase
+
** GDP kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.7.7.2 EC-1.7.7.2]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
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== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NITRATE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[NITRITE]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[GDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[GTP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 nitrate[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''=>''' 1 nitrite[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 H2O[c]
+
** 1 GDP[c] '''+''' 1 ATP[c] '''=>''' 1 GTP[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN19698_c0_g2_i1]]
+
* Gene: [[DN20568_c0_g1_i2]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN8917_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN17885_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
+
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
−
** '''3''' reactions found over '''NA''' reactions in the full pathway
+
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
 +
** '''4''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21830 21830]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27687 27687]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00791 R00791]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00330 R00330]
−
* UNIPROT:
+
{{#set: common name=GDP kinase}}
−
** [http://www.uniprot.org/uniprot/Q55366 Q55366]
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: common name=ferredoxin--nitrate reductase}}
 
−
{{#set: ec number=EC-1.7.7.2}}
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN19698_c0_g2_i1}}
+
{{#set: gene associated=DN20568_c0_g1_i2|DN8917_c0_g1_i1|DN17885_c0_g1_i1}}
−
{{#set: in pathway=PWY490-3}}
+
{{#set: in pathway=PPGPPMET-PWY|PWY-7221}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction GDPKIN-RXN

  • common name:
    • GDP kinase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP[c] + 1 ATP[c] => 1 GTP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PPGPPMET-PWY, ppGpp biosynthesis: PPGPPMET-PWY
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7221, guanosine ribonucleotides de novo biosynthesis: PWY-7221
    • 4 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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