Difference between revisions of "RXN0-1461"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17791 RXN-17791] == * common name: ** 3-ketoacyl-CoA thiolase * ec number: ** [http://enzyme.ex...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * common name: ** coproporphyrinogen III oxidase * ec number: ** [http://en...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17791 RXN-17791] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
 
* common name:
 
* common name:
−
** 3-ketoacyl-CoA thiolase
+
** coproporphyrinogen III oxidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 11: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[CPD-19158]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-19147]][c]
+
** 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 3-oxo-(9Z)-hexadecenoyl-CoA[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 (7Z)-tetradecenoyl-CoA[c]
+
** 1 coproporphyrinogen III[c] '''+''' 1 oxygen[c] '''+''' 2 H+[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 CO2[c] '''+''' 2 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN11886_c0_g1_i2]]
+
* Gene: [[DN15337_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN11478_c0_g1_i2]]
+
* Gene: [[DN20161_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''NA''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 +
** '''4''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 +
** '''5''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 29: Line 37:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=3-ketoacyl-CoA thiolase}}
+
* RHEA:
−
{{#set: ec number=EC-2.3.1.16}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18258 18258]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
 +
** [http://www.uniprot.org/uniprot/P36552 P36552]
 +
** [http://www.uniprot.org/uniprot/O25376 O25376]
 +
** [http://www.uniprot.org/uniprot/P36553 P36553]
 +
** [http://www.uniprot.org/uniprot/P33771 P33771]
 +
** [http://www.uniprot.org/uniprot/P43899 P43899]
 +
** [http://www.uniprot.org/uniprot/O25824 O25824]
 +
** [http://www.uniprot.org/uniprot/P54304 P54304]
 +
** [http://www.uniprot.org/uniprot/P11353 P11353]
 +
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
 +
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
 +
** [http://www.uniprot.org/uniprot/P36551 P36551]
 +
** [http://www.uniprot.org/uniprot/P35055 P35055]
 +
** [http://www.uniprot.org/uniprot/P43898 P43898]
 +
** [http://www.uniprot.org/uniprot/P72848 P72848]
 +
** [http://www.uniprot.org/uniprot/P73245 P73245]
 +
** [http://www.uniprot.org/uniprot/P74132 P74132]
 +
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
 +
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
 +
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
 +
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
 +
** [http://www.uniprot.org/uniprot/P95651 P95651]
 +
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
 +
{{#set: common name=coproporphyrinogen III oxidase}}
 +
{{#set: ec number=EC-1.3.3.3}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN11886_c0_g1_i2|DN11478_c0_g1_i2}}
+
{{#set: gene associated=DN15337_c0_g1_i1|DN20161_c0_g1_i1}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II|PWY-7159|PWY0-1415}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction RXN0-1461

  • common name:
    • coproporphyrinogen III oxidase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over NA reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over NA reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over NA reactions in the full pathway
  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over NA reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=RXN0-1461&oldid=8974"