Difference between revisions of "RXN-8660"
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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3443 RXN-3443] == * common name: ** NAD+-dependent glyceraldehyde-3-phosphate dehydrogenase * e...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8660 RXN-8660] == * common name: ** [histone-H3]-lysine-36 demethylase * direction: ** LEFT-TO-...") |
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| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8660 RXN-8660] == |
* common name: | * common name: | ||
| − | ** | + | ** [histone-H3]-lysine-36 demethylase |
| − | |||
| − | |||
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* Synonym(s): | * Synonym(s): | ||
| + | ** JHDM1A | ||
| + | ** JmjC domain-containing histone demethylase 1A | ||
| + | ** H3-K36-specific demethylase | ||
| + | ** histone-lysine (H3-K36) demethylase | ||
| + | ** histone demethylase | ||
| + | ** protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CPD-8900]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-8901]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 a [protein] N6,N6-dimethyl-L-lysine[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''=>''' 1 a [protein] N6-methyl-L-lysine[c] '''+''' 1 succinate[c] '''+''' 1 formaldehyde[c] '''+''' 1 CO2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[DN21730_c0_g1_i2]] |
** Source: [[annotation-transcriptome]] | ** Source: [[annotation-transcriptome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 29: | Line 31: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21789 21789] |
| − | {{#set: common name= | + | {{#set: common name=[histone-H3]-lysine-36 demethylase}} |
| − | |||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=JHDM1A|JmjC domain-containing histone demethylase 1A|H3-K36-specific demethylase|histone-lysine (H3-K36) demethylase|histone demethylase|protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase}} |
| − | {{#set: in pathway= | + | {{#set: gene associated=DN21730_c0_g1_i2}} |
| + | {{#set: in pathway=}} | ||
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-transcriptome}} | {{#set: reconstruction source=annotation-transcriptome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 14:22, 15 January 2021
Contents
Reaction RXN-8660
- common name:
- [histone-H3]-lysine-36 demethylase
- direction:
- LEFT-TO-RIGHT
- Synonym(s):
- JHDM1A
- JmjC domain-containing histone demethylase 1A
- H3-K36-specific demethylase
- histone-lysine (H3-K36) demethylase
- histone demethylase
- protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase
Reaction Formula
- With identifiers:
- 1 CPD-8900[c] + 1 2-KETOGLUTARATE[c] + 1 OXYGEN-MOLECULE[c] => 1 CPD-8901[c] + 1 SUC[c] + 1 FORMALDEHYDE[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 a [protein] N6,N6-dimethyl-L-lysine[c] + 1 2-oxoglutarate[c] + 1 oxygen[c] => 1 a [protein] N6-methyl-L-lysine[c] + 1 succinate[c] + 1 formaldehyde[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: DN21730_c0_g1_i2
- Source: annotation-transcriptome
- Assignment: EC-NUMBER
- Source: annotation-transcriptome
Pathways
Reconstruction information
- Category: annotation
- Source: annotation-transcriptome
- Tool: pathwaytools
- Source: annotation-transcriptome
External links
- RHEA:
Property "Common name" (as page type) with input value "histone-H3]-lysine-36 demethylase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
