Difference between revisions of "OXALODECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7669 RXN-7669] == * common name: ** 1,4-α-glucan branching enzyme * ec number: ** [http:/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * common name: ** oxaloacetate decarboxylase * ec number: ** [h...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7669 RXN-7669] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] ==
 
* common name:
 
* common name:
−
** 1,4-α-glucan branching enzyme
+
** oxaloacetate decarboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.18 EC-2.4.1.18]
+
** [http://enzyme.expasy.org/EC/1.1.1.40 EC-1.1.1.40]
 +
** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3]
 +
** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
−
** Amylo-(1,4-1,6)-transglycosylase
 
−
** Amylo-(1,4 to 1,6)transglucosidase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[POLY-GLUCOSYLATED-GLYCOGENINS]][c] '''=>''' 1 [[Glycogens]][c]
+
** 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a glucosylated glycogenin[c] '''=>''' 1 a glycogen[c]
+
** 1 oxaloacetate[c] '''+''' 1 H+[c] '''=>''' 1 pyruvate[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN19586_c0_g2_i1]]
+
* Gene: [[DN19199_c1_g1_i2]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN16185_c0_g1_i1]]
+
* Gene: [[DN18974_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN19586_c0_g2_i2]]
+
* Gene: [[DN16931_c0_g1_i1]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN19586_c0_g2_i4]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN17187_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5067]], glycogen biosynthesis II (from UDP-D-Glucose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5067 PWY-5067]
+
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY]
 +
** '''2''' reactions found over '''NA''' reactions in the full pathway
 +
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY]
 +
** '''2''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339]
 
** '''2''' reactions found over '''NA''' reactions in the full pathway
 
** '''2''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=1,4-α-glucan branching enzyme}}
+
* RHEA:
−
{{#set: ec number=EC-2.4.1.18}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P13187 P13187]
 +
** [http://www.uniprot.org/uniprot/P13155 P13155]
 +
** [http://www.uniprot.org/uniprot/P13156 P13156]
 +
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
 +
{{#set: common name=oxaloacetate decarboxylase}}
 +
{{#set: ec number=EC-1.1.1.40}}
 +
{{#set: ec number=EC-4.1.1.3}}
 +
{{#set: ec number=EC-1.1.1.38}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Amylo-(1,4-1,6)-transglycosylase|Amylo-(1,4 to 1,6)transglucosidase}}
+
{{#set: gene associated=DN19199_c1_g1_i2|DN18974_c0_g1_i1|DN16931_c0_g1_i1}}
−
{{#set: gene associated=DN19586_c0_g2_i1|DN16185_c0_g1_i1|DN19586_c0_g2_i2|DN19586_c0_g2_i4|DN17187_c0_g1_i1}}
+
{{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY|P184-PWY|PWY-6339}}
−
{{#set: in pathway=PWY-5067}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction OXALODECARB-RXN

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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