Difference between revisions of "ACONITATEDEHYDR-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18931 RXN-18931] == * common name: ** Man7GlcNAc2 isomer 7A1,2B1,2 1,2-α-mannosidase * ec...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * common name: ** citrate hydro-lyase (cis-aconitate-fo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18931 RXN-18931] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] ==
 
* common name:
 
* common name:
−
** Man7GlcNAc2 isomer 7A1,2B1,2 1,2-α-mannosidase
+
** citrate hydro-lyase (cis-aconitate-forming)
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/3.2.1.113 EC-3.2.1.113]
 
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Man7GlcNAc2-protein-A12B12]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Man6-GlcNAc2-protein-A12B2]][c] '''+''' 1 [[CPD-12601]][c]
+
** 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 Man7GlcNAc2-[protein] (isomer 7A1,2B1,2)[c] '''+''' 1 H2O[c] '''=>''' 1 Man6GlcNAc2-[protein] (isomer 6A1,2B2)[c] '''+''' 1 &beta;-D-mannopyranose[c]
+
** 1 citrate[c] '''<=>''' 1 cis-aconitate[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN18755_c0_g1_i2]]
+
* Gene: [[DN20506_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN12291_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7919]], protein N-glycosylation processing phase (plants and animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7919 PWY-7919]
+
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
−
** '''14''' reactions found over '''NA''' reactions in the full pathway
+
** '''5''' reactions found over '''NA''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''11''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''7''' reactions found over '''NA''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''6''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''9''' reactions found over '''NA''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 +
** '''5''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''5''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 +
** '''3''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''6''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=Man7GlcNAc2 isomer 7A1,2B1,2 1,2-&alpha;-mannosidase}}
+
* RHEA:
−
{{#set: ec number=EC-3.2.1.113}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* LIGAND-RXN:
−
{{#set: gene associated=DN18755_c0_g1_i2}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
−
{{#set: in pathway=PWY-7919}}
+
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P16276 P16276]
 +
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 +
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 +
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 +
** [http://www.uniprot.org/uniprot/P37032 P37032]
 +
** [http://www.uniprot.org/uniprot/P81291 P81291]
 +
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 +
** [http://www.uniprot.org/uniprot/P36683 P36683]
 +
** [http://www.uniprot.org/uniprot/O53166 O53166]
 +
** [http://www.uniprot.org/uniprot/P25516 P25516]
 +
** [http://www.uniprot.org/uniprot/P09339 P09339]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 +
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 +
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 +
** [http://www.uniprot.org/uniprot/P28271 P28271]
 +
** [http://www.uniprot.org/uniprot/P21399 P21399]
 +
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 +
** [http://www.uniprot.org/uniprot/P19414 P19414]
 +
** [http://www.uniprot.org/uniprot/P20004 P20004]
 +
** [http://www.uniprot.org/uniprot/P49609 P49609]
 +
** [http://www.uniprot.org/uniprot/P74582 P74582]
 +
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 +
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 +
** [http://www.uniprot.org/uniprot/O04916 O04916]
 +
{{#set: common name=citrate hydro-lyase (cis-aconitate-forming)}}
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: gene associated=DN20506_c0_g1_i1|DN12291_c0_g1_i1}}
 +
{{#set: in pathway=PWY-5392|P105-PWY|PWY66-398|PWY-7124|P23-PWY|PWY-5913|FERMENTATION-PWY|PWY-6969|REDCITCYC|PWY-6549|TCA|GLYOXYLATE-BYPASS|PWY-5750|PWY-7254|PWY-5690|PWY-6728}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction ACONITATEDEHYDR-RXN

  • common name:
    • citrate hydro-lyase (cis-aconitate-forming)
  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 citrate[c] <=> 1 cis-aconitate[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 5 reactions found over NA reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 8 reactions found over NA reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 11 reactions found over NA reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 7 reactions found over NA reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 6 reactions found over NA reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 8 reactions found over NA reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 8 reactions found over NA reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 9 reactions found over NA reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 5 reactions found over NA reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over NA reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 8 reactions found over NA reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 5 reactions found over NA reactions in the full pathway
  • PWY-5750, itaconate biosynthesis: PWY-5750
    • 3 reactions found over NA reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 6 reactions found over NA reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over NA reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 8 reactions found over NA reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=ACONITATEDEHYDR-RXN&oldid=9088"