Difference between revisions of "TRIOSEPISOMERIZATION-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * common name: ** citrate hydro-lyase (cis-aconitate-fo...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIOSEPISOMERIZATION-RXN TRIOSEPISOMERIZATION-RXN] == * common name: ** triose-phosphate isomerase...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIOSEPISOMERIZATION-RXN TRIOSEPISOMERIZATION-RXN] ==
 
* common name:
 
* common name:
−
** citrate hydro-lyase (cis-aconitate-forming)
+
** triose-phosphate isomerase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.3.1.1 EC-5.3.1.1]
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
Line 9: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 citrate[c] '''<=>''' 1 cis-aconitate[c] '''+''' 1 H2O[c]
+
** 1 D-glyceraldehyde 3-phosphate[c] '''<=>''' 1 glycerone phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN20506_c0_g1_i1]]
+
* Gene: [[DN12963_c0_g1_i1]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN12291_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
−
** '''5''' reactions found over '''NA''' reactions in the full pathway
+
** '''12''' reactions found over '''NA''' reactions in the full pathway
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
−
** '''11''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
 
** '''7''' reactions found over '''NA''' reactions in the full pathway
 
** '''7''' reactions found over '''NA''' reactions in the full pathway
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
+
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 
** '''6''' reactions found over '''NA''' reactions in the full pathway
 
** '''6''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
+
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
+
** '''7''' reactions found over '''NA''' reactions in the full pathway
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
+
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
 
** '''9''' reactions found over '''NA''' reactions in the full pathway
 
** '''9''' reactions found over '''NA''' reactions in the full pathway
−
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
+
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
−
** '''5''' reactions found over '''NA''' reactions in the full pathway
+
** '''10''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
+
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
** '''8''' reactions found over '''NA''' reactions in the full pathway
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
+
* [[PWY66-373]], sucrose degradation V (sucrose &alpha;-glucosidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-373 PWY66-373]
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''5''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 
 
** '''3''' reactions found over '''NA''' reactions in the full pathway
 
** '''3''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
+
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
−
** '''6''' reactions found over '''NA''' reactions in the full pathway
+
** '''11''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
+
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
+
** '''11''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
+
** '''9''' reactions found over '''NA''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''11''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 60: Line 51:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18588 18588]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015]
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
+
** [http://www.uniprot.org/uniprot/P19118 P19118]
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
+
** [http://www.uniprot.org/uniprot/P21820 P21820]
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
+
** [http://www.uniprot.org/uniprot/P48501 P48501]
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
+
** [http://www.uniprot.org/uniprot/P62002 P62002]
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
+
** [http://www.uniprot.org/uniprot/O27120 O27120]
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
+
** [http://www.uniprot.org/uniprot/P27876 P27876]
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
+
** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6]
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
+
** [http://www.uniprot.org/uniprot/P19583 P19583]
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
+
** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2]
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
+
** [http://www.uniprot.org/uniprot/P47721 P47721]
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
+
** [http://www.uniprot.org/uniprot/P47670 P47670]
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
+
** [http://www.uniprot.org/uniprot/P50918 P50918]
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
+
** [http://www.uniprot.org/uniprot/P43727 P43727]
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
+
** [http://www.uniprot.org/uniprot/Q58923 Q58923]
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
+
** [http://www.uniprot.org/uniprot/O28965 O28965]
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
+
** [http://www.uniprot.org/uniprot/Q59182 Q59182]
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
+
** [http://www.uniprot.org/uniprot/O59536 O59536]
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
+
** [http://www.uniprot.org/uniprot/P36204 P36204]
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
+
** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31]
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
+
** [http://www.uniprot.org/uniprot/P04828 P04828]
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
+
** [http://www.uniprot.org/uniprot/P00943 P00943]
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
+
** [http://www.uniprot.org/uniprot/P00942 P00942]
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
+
** [http://www.uniprot.org/uniprot/P00940 P00940]
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
+
** [http://www.uniprot.org/uniprot/P60175 P60175]
−
{{#set: common name=citrate hydro-lyase (cis-aconitate-forming)}}
+
** [http://www.uniprot.org/uniprot/P0A858 P0A858]
 +
** [http://www.uniprot.org/uniprot/P60174 P60174]
 +
** [http://www.uniprot.org/uniprot/P00941 P00941]
 +
** [http://www.uniprot.org/uniprot/P15426 P15426]
 +
** [http://www.uniprot.org/uniprot/P17751 P17751]
 +
** [http://www.uniprot.org/uniprot/P00939 P00939]
 +
** [http://www.uniprot.org/uniprot/P12863 P12863]
 +
** [http://www.uniprot.org/uniprot/P07669 P07669]
 +
** [http://www.uniprot.org/uniprot/P35144 P35144]
 +
** [http://www.uniprot.org/uniprot/P48494 P48494]
 +
** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7]
 +
** [http://www.uniprot.org/uniprot/P29613 P29613]
 +
** [http://www.uniprot.org/uniprot/P30741 P30741]
 +
** [http://www.uniprot.org/uniprot/Q01893 Q01893]
 +
** [http://www.uniprot.org/uniprot/P48499 P48499]
 +
** [http://www.uniprot.org/uniprot/P48496 P48496]
 +
** [http://www.uniprot.org/uniprot/P46226 P46226]
 +
** [http://www.uniprot.org/uniprot/P46225 P46225]
 +
** [http://www.uniprot.org/uniprot/P48492 P48492]
 +
** [http://www.uniprot.org/uniprot/Q56738 Q56738]
 +
** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5]
 +
** [http://www.uniprot.org/uniprot/P46711 P46711]
 +
** [http://www.uniprot.org/uniprot/O32757 O32757]
 +
** [http://www.uniprot.org/uniprot/O74067 O74067]
 +
** [http://www.uniprot.org/uniprot/P48491 P48491]
 +
{{#set: common name=triose-phosphate isomerase}}
 +
{{#set: ec number=EC-5.3.1.1}}
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: gene associated=DN20506_c0_g1_i1|DN12291_c0_g1_i1}}
+
{{#set: gene associated=DN12963_c0_g1_i1}}
−
{{#set: in pathway=PWY-5392|P105-PWY|PWY66-398|PWY-7124|P23-PWY|PWY-5913|FERMENTATION-PWY|PWY-6969|REDCITCYC|PWY-6549|TCA|GLYOXYLATE-BYPASS|PWY-5750|PWY-7254|PWY-5690|PWY-6728}}
+
{{#set: in pathway=CALVIN-PWY|PWY-6142|P341-PWY|PWY-7003|ANAGLYCOLYSIS-PWY|PWY-5484|PWY-1042|PWY66-373|PWY66-399|GLUCONEO-PWY|P185-PWY|GLYCOLYSIS}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:23, 15 January 2021

Reaction TRIOSEPISOMERIZATION-RXN

  • common name:
    • triose-phosphate isomerase
  • ec number:
  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 12 reactions found over NA reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 7 reactions found over NA reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over NA reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 7 reactions found over NA reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 9 reactions found over NA reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 10 reactions found over NA reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 8 reactions found over NA reactions in the full pathway
  • PWY66-373, sucrose degradation V (sucrose α-glucosidase): PWY66-373
    • 3 reactions found over NA reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 11 reactions found over NA reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 11 reactions found over NA reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 9 reactions found over NA reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 11 reactions found over NA reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=TRIOSEPISOMERIZATION-RXN&oldid=9103"