Difference between revisions of "RXN-22"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GMP-SYN-GLUT-RXN GMP-SYN-GLUT-RXN] == * common name: ** xanthosine-5'-phosphate:L-glutamine amido-l...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-22 RXN-22] == * common name: ** canavaninosuccinate lyase * ec number: ** [http://enzyme.expasy...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GMP-SYN-GLUT-RXN GMP-SYN-GLUT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-22 RXN-22] ==
 
* common name:
 
* common name:
−
** xanthosine-5'-phosphate:L-glutamine amido-ligase (AMP-forming)
+
** canavaninosuccinate lyase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.5.2 EC-6.3.5.2]
+
** [http://enzyme.expasy.org/EC/4.3.2.1 EC-4.3.2.1]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 11: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[ATP]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[GMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[CANAVANINOSUCCINATE]][c] '''=>''' 1 [[CANAVANINE]][c] '''+''' 1 [[FUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 XMP[c] '''+''' 1 H2O[c] '''+''' 1 L-glutamine[c] '''+''' 1 ATP[c] '''=>''' 2 H+[c] '''+''' 1 L-glutamate[c] '''+''' 1 GMP[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
** 1 canavaninosuccinate[c] '''=>''' 1 L-canavanine[c] '''+''' 1 fumarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN17699_c0_g1_i1]]
+
* Gene: [[DN20206_c0_g1_i5]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN18342_c0_g1_i2]]
+
* Gene: [[DN20206_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN17699_c0_g1_i2]]
+
* Gene: [[DN20206_c0_g1_i4]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN20206_c0_g1_i3]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
+
* [[PWY-5]], canavanine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5 PWY-5]
−
** '''4''' reactions found over '''NA''' reactions in the full pathway
+
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 34: Line 37:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common name=canavaninosuccinate lyase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11681 11681]
+
{{#set: ec number=EC-4.3.2.1}}
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01231 R01231]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P32073 P32073]
 
−
** [http://www.uniprot.org/uniprot/P49915 P49915]
 
−
** [http://www.uniprot.org/uniprot/O25165 O25165]
 
−
** [http://www.uniprot.org/uniprot/Q58531 Q58531]
 
−
** [http://www.uniprot.org/uniprot/Q9PN49 Q9PN49]
 
−
** [http://www.uniprot.org/uniprot/P29727 P29727]
 
−
** [http://www.uniprot.org/uniprot/O66601 O66601]
 
−
** [http://www.uniprot.org/uniprot/P49056 P49056]
 
−
** [http://www.uniprot.org/uniprot/Q9CFJ0 Q9CFJ0]
 
−
** [http://www.uniprot.org/uniprot/Q9JW60 Q9JW60]
 
−
** [http://www.uniprot.org/uniprot/P44335 P44335]
 
−
** [http://www.uniprot.org/uniprot/P38625 P38625]
 
−
** [http://www.uniprot.org/uniprot/P49057 P49057]
 
−
** [http://www.uniprot.org/uniprot/P04079 P04079]
 
−
** [http://www.uniprot.org/uniprot/Q7VLE9 Q7VLE9]
 
−
{{#set: common name=xanthosine-5'-phosphate:L-glutamine amido-ligase (AMP-forming)}}
 
−
{{#set: ec number=EC-6.3.5.2}}
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN17699_c0_g1_i1|DN18342_c0_g1_i2|DN17699_c0_g1_i2}}
+
{{#set: gene associated=DN20206_c0_g1_i5|DN20206_c0_g1_i1|DN20206_c0_g1_i4|DN20206_c0_g1_i3}}
−
{{#set: in pathway=PWY-7221}}
+
{{#set: in pathway=PWY-5}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:20, 15 January 2021

Reaction RXN-22

  • common name:
    • canavaninosuccinate lyase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5, canavanine biosynthesis: PWY-5
    • 1 reactions found over NA reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=RXN-22&oldid=8042"