Difference between revisions of "DIAMINOPIMDECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETOOHBUTREDUCTOISOM-RXN ACETOOHBUTREDUCTOISOM-RXN] == * common name: ** (R)-2,3-dihydroxy-3-methy...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * common name: ** diaminopimelate decarboxylase * ec...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETOOHBUTREDUCTOISOM-RXN ACETOOHBUTREDUCTOISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
 
* common name:
 
* common name:
−
** (R)-2,3-dihydroxy-3-methylpentanoate:NADP+ oxidoreductase (isomerizing)
+
** diaminopimelate decarboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.86 EC-1.1.1.86]
+
** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 11: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[2-ACETO-2-HYDROXY-BUTYRATE]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[1-KETO-2-METHYLVALERATE]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LYS]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 (S)-2-aceto-2-hydroxybutanoate[c] '''+''' 1 NADPH[c] '''=>''' 1 (R)-2,3-dihydroxy-3-methylpentanoate[c] '''+''' 1 NADP+[c]
+
** 1 meso-diaminopimelate[c] '''+''' 1 H+[c] '''=>''' 1 L-lysine[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN22081_c0_g1_i1]]
+
* Gene: [[DN21826_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN21543_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
+
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
 +
** '''6''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
 
** '''5''' reactions found over '''NA''' reactions in the full pathway
 
** '''5''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
+
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
−
** '''4''' reactions found over '''NA''' reactions in the full pathway
+
** '''6''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
 +
** '''7''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13493 13493]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06168 P06168]
+
** [http://www.uniprot.org/uniprot/P19572 P19572]
−
** [http://www.uniprot.org/uniprot/P44822 P44822]
+
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
−
** [http://www.uniprot.org/uniprot/O25097 O25097]
+
** [http://www.uniprot.org/uniprot/P44316 P44316]
−
** [http://www.uniprot.org/uniprot/Q02138 Q02138]
+
** [http://www.uniprot.org/uniprot/P56129 P56129]
−
** [http://www.uniprot.org/uniprot/Q57179 Q57179]
+
** [http://www.uniprot.org/uniprot/O67262 O67262]
−
** [http://www.uniprot.org/uniprot/Q9JTI3 Q9JTI3]
+
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
−
** [http://www.uniprot.org/uniprot/Q9PHN5 Q9PHN5]
+
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
−
** [http://www.uniprot.org/uniprot/P05793 P05793]
+
** [http://www.uniprot.org/uniprot/P00861 P00861]
−
** [http://www.uniprot.org/uniprot/P38674 P38674]
+
** [http://www.uniprot.org/uniprot/O27390 O27390]
−
** [http://www.uniprot.org/uniprot/Q59500 Q59500]
+
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
−
** [http://www.uniprot.org/uniprot/Q01292 Q01292]
+
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
−
** [http://www.uniprot.org/uniprot/Q05758 Q05758]
+
** [http://www.uniprot.org/uniprot/O29458 O29458]
−
** [http://www.uniprot.org/uniprot/O82043 O82043]
+
** [http://www.uniprot.org/uniprot/P41023 P41023]
−
** [http://www.uniprot.org/uniprot/P78827 P78827]
+
** [http://www.uniprot.org/uniprot/P23630 P23630]
−
{{#set: common name=(R)-2,3-dihydroxy-3-methylpentanoate:NADP+ oxidoreductase (isomerizing)}}
+
** [http://www.uniprot.org/uniprot/P09890 P09890]
−
{{#set: ec number=EC-1.1.1.86}}
+
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 +
** [http://www.uniprot.org/uniprot/O05321 O05321]
 +
{{#set: common name=diaminopimelate decarboxylase}}
 +
{{#set: ec number=EC-4.1.1.20}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN22081_c0_g1_i1}}
+
{{#set: gene associated=DN21826_c0_g1_i1|DN21543_c0_g1_i1}}
−
{{#set: in pathway=ILEUSYN-PWY|PWY-5103}}
+
{{#set: in pathway=PWY-2941|PWY-2942|DAPLYSINESYN-PWY|PWY-5097}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:21, 15 January 2021

Reaction DIAMINOPIMDECARB-RXN

  • common name:
    • diaminopimelate decarboxylase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2941, L-lysine biosynthesis II: PWY-2941
    • 6 reactions found over NA reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III: PWY-2942
    • 5 reactions found over NA reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
    • 6 reactions found over NA reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI: PWY-5097
    • 7 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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