Difference between revisions of "2.8.1.6-RXN"
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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] == * common name: ** 2,3-dihydroxy-isovale...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == * common name: ** biotin synthase * ec number: ** [http://enzyme.expasy...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == |
* common name: | * common name: | ||
− | ** | + | ** biotin synthase |
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6] |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
Line 11: | Line 11: | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] |
* With common name(s): | * With common name(s): | ||
− | ** | + | ** 2 S-adenosyl-L-methionine[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 1 dethiobiotin[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 1 an unsulfurated [sulfur carrier][c] '''+''' 2 L-methionine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 biotin[c] '''+''' 2 5'-deoxyadenosine[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * Gene: [[ | + | * Gene: [[DN33379_c0_g1_i1]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Source: [[annotation-transcriptome]] | ** Source: [[annotation-transcriptome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
− | * [[ | + | * [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380] |
− | ** ''' | + | ** '''1''' reactions found over '''NA''' reactions in the full pathway |
− | * [[ | + | * [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507] |
− | ** ''' | + | ** '''1''' reactions found over '''NA''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
Line 40: | Line 31: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P53557 P53557] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O67104 O67104] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P44987 P44987] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q58692 Q58692] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P0A506 P0A506] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5] |
− | {{#set: common name= | + | ** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3] |
− | {{#set: ec number=EC- | + | ** [http://www.uniprot.org/uniprot/P46396 P46396] |
+ | ** [http://www.uniprot.org/uniprot/Q47862 Q47862] | ||
+ | ** [http://www.uniprot.org/uniprot/P19206 P19206] | ||
+ | ** [http://www.uniprot.org/uniprot/P32451 P32451] | ||
+ | ** [http://www.uniprot.org/uniprot/P54967 P54967] | ||
+ | ** [http://www.uniprot.org/uniprot/P46715 P46715] | ||
+ | ** [http://www.uniprot.org/uniprot/P73538 P73538] | ||
+ | ** [http://www.uniprot.org/uniprot/P12996 P12996] | ||
+ | ** [http://www.uniprot.org/uniprot/O59778 O59778] | ||
+ | {{#set: common name=biotin synthase}} | ||
+ | {{#set: ec number=EC-2.8.1.6}} | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: gene associated= | + | {{#set: gene associated=DN33379_c0_g1_i1}} |
− | {{#set: in pathway= | + | {{#set: in pathway=PWY-7380|PWY0-1507}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-transcriptome}} | {{#set: reconstruction source=annotation-transcriptome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} |
Latest revision as of 14:22, 15 January 2021
Contents
Reaction 2.8.1.6-RXN
- common name:
- biotin synthase
- ec number:
- direction:
- LEFT-TO-RIGHT
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 S-ADENOSYLMETHIONINE[c] + 1 Sulfurated-Sulfur-Acceptors[c] + 1 DETHIOBIOTIN[c] + 2 Reduced-2Fe-2S-Ferredoxins[c] => 1 Unsulfurated-Sulfur-Acceptors[c] + 2 MET[c] + 2 Oxidized-2Fe-2S-Ferredoxins[c] + 1 BIOTIN[c] + 2 CH33ADO[c]
- With common name(s):
- 2 S-adenosyl-L-methionine[c] + 1 a sulfurated [sulfur carrier][c] + 1 dethiobiotin[c] + 2 a reduced [2Fe-2S] ferredoxin[c] => 1 an unsulfurated [sulfur carrier][c] + 2 L-methionine[c] + 2 an oxidized [2Fe-2S] ferredoxin[c] + 1 biotin[c] + 2 5'-deoxyadenosine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: DN33379_c0_g1_i1
- Source: annotation-transcriptome
- Assignment: EC-NUMBER
- Source: annotation-transcriptome
Pathways
- PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
- 1 reactions found over NA reactions in the full pathway
- PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
- 1 reactions found over NA reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-transcriptome
- Tool: pathwaytools
- Source: annotation-transcriptome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: