Difference between revisions of "DTDPGLUCDEHYDRAT-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] == * common name: ** leucine—tRNA ligase *...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] == * common name: ** dTDP-glucose 4,6-dehydratase * ec n...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] ==
 
* common name:
 
* common name:
−
** leucine—tRNA ligase
+
** dTDP-glucose 4,6-dehydratase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.4 EC-6.1.1.4]
+
** [http://enzyme.expasy.org/EC/4.2.1.46 EC-4.2.1.46]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 11: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[LEU-tRNAs]][c] '''+''' 1 [[LEU]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-LEU-tRNAs]][c]
+
** 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a tRNALeu[c] '''+''' 1 L-leucine[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-leucyl-[tRNALeu][c]
+
** 1 dTDP-α-D-glucose[c] '''=>''' 1 H2O[c] '''+''' 1 dTDP-4-dehydro-6-deoxy-α-D-glucopyranose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN16008_c0_g1_i1]]
+
* Gene: [[DN19933_c0_g1_i2]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN19888_c0_g1_i1]]
+
* Gene: [[DN22510_c0_g1_i5]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN18337_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN15032_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN20884_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-6976]], dTDP-L-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6976 PWY-6976]
−
** '''20''' reactions found over '''NA''' reactions in the full pathway
+
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7657]], dTDP-β-L-digitoxose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7657 PWY-7657]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7301]], dTDP-4-O-demethyl-β-L-noviose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7301 PWY-7301]
 +
** '''2''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-3221]], dTDP-L-rhamnose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7312]], dTDP-D-β-fucofuranose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7312 PWY-7312]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7104]], dTDP-L-megosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7104 PWY-7104]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7414]], dTDP-α-D-mycaminose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7414 PWY-7414]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7315 PWY-7315]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7413]], dTDP-6-deoxy-α-D-allose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7413 PWY-7413]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
 +
** '''3''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6953]], dTDP-3-acetamido-α-D-fucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6953 PWY-6953]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7814 PWY-7814]
 +
** '''2''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7316 PWY-7316]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7318 PWY-7318]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6973 PWY-6973]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6974]], dTDP-L-olivose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6974 PWY-6974]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7688 PWY-7688]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6808]], dTDP-D-forosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6808 PWY-6808]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6942]], dTDP-D-desosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6942 PWY-6942]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7440]], dTDP-β-L-4-epi-vancosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7440 PWY-7440]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 41: Line 70:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11689 11689]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03657 R03657]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O27552 O27552]
+
** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
−
** [http://www.uniprot.org/uniprot/P56457 P56457]
+
** [http://www.uniprot.org/uniprot/P44914 P44914]
−
** [http://www.uniprot.org/uniprot/O51267 O51267]
+
** [http://www.uniprot.org/uniprot/P29782 P29782]
−
** [http://www.uniprot.org/uniprot/O83595 O83595]
+
** [http://www.uniprot.org/uniprot/P27830 P27830]
−
** [http://www.uniprot.org/uniprot/O84211 O84211]
+
** [http://www.uniprot.org/uniprot/P55294 P55294]
−
** [http://www.uniprot.org/uniprot/Q9Z930 Q9Z930]
+
** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
−
** [http://www.uniprot.org/uniprot/P47508 P47508]
+
** [http://www.uniprot.org/uniprot/P37759 P37759]
−
** [http://www.uniprot.org/uniprot/P36430 P36430]
+
** [http://www.uniprot.org/uniprot/P26391 P26391]
−
** [http://www.uniprot.org/uniprot/O66680 O66680]
+
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
−
** [http://www.uniprot.org/uniprot/O67646 O67646]
+
** [http://www.uniprot.org/uniprot/P39630 P39630]
−
** [http://www.uniprot.org/uniprot/Q9ZDB1 Q9ZDB1]
+
** [http://www.uniprot.org/uniprot/P37777 P37777]
−
** [http://www.uniprot.org/uniprot/Q9WY15 Q9WY15]
+
** [http://www.uniprot.org/uniprot/P37761 P37761]
−
** [http://www.uniprot.org/uniprot/Q9PNK3 Q9PNK3]
+
** [http://www.uniprot.org/uniprot/Q54144 Q54144]
−
** [http://www.uniprot.org/uniprot/Q9JW39 Q9JW39]
+
** [http://www.uniprot.org/uniprot/Q56173 Q56173]
−
** [http://www.uniprot.org/uniprot/Q9ZJ63 Q9ZJ63]
+
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
−
** [http://www.uniprot.org/uniprot/Q9JXT2 Q9JXT2]
+
** [http://www.uniprot.org/uniprot/P55293 P55293]
−
** [http://www.uniprot.org/uniprot/P43827 P43827]
+
** [http://www.uniprot.org/uniprot/O66249 O66249]
−
** [http://www.uniprot.org/uniprot/O58698 O58698]
+
** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
−
** [http://www.uniprot.org/uniprot/Q9CHB6 Q9CHB6]
+
** [http://www.uniprot.org/uniprot/O08246 O08246]
−
** [http://www.uniprot.org/uniprot/P26637 P26637]
+
** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
−
** [http://www.uniprot.org/uniprot/P75398 P75398]
+
** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
−
** [http://www.uniprot.org/uniprot/P73274 P73274]
+
{{#set: common name=dTDP-glucose 4,6-dehydratase}}
−
** [http://www.uniprot.org/uniprot/Q48955 Q48955]
+
{{#set: ec number=EC-4.2.1.46}}
−
** [http://www.uniprot.org/uniprot/Q48964 Q48964]
 
−
** [http://www.uniprot.org/uniprot/Q49051 Q49051]
 
−
** [http://www.uniprot.org/uniprot/P11325 P11325]
 
−
** [http://www.uniprot.org/uniprot/P07813 P07813]
 
−
** [http://www.uniprot.org/uniprot/P10857 P10857]
 
−
** [http://www.uniprot.org/uniprot/P15181 P15181]
 
−
** [http://www.uniprot.org/uniprot/Q50192 Q50192]
 
−
{{#set: common name=leucine—tRNA ligase}}
 
−
{{#set: ec number=EC-6.1.1.4}}
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN16008_c0_g1_i1|DN19888_c0_g1_i1|DN18337_c0_g1_i1|DN15032_c0_g1_i1|DN20884_c0_g1_i1}}
+
{{#set: gene associated=DN19933_c0_g1_i2|DN22510_c0_g1_i5}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
{{#set: in pathway=PWY-6976|PWY-7657|PWY-7301|PWY-3221|PWY-7312|PWY-7104|PWY-7414|PWY-7315|PWY-7413|DTDPRHAMSYN-PWY|PWY-6953|PWY-7814|PWY-7316|PWY-7318|PWY-6973|PWY-6974|PWY-7688|PWY-6808|PWY-6942|PWY-7440}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction DTDPGLUCDEHYDRAT-RXN

  • common name:
    • dTDP-glucose 4,6-dehydratase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6976, dTDP-L-mycarose biosynthesis: PWY-6976
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7657, dTDP-β-L-digitoxose biosynthesis: PWY-7657
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis: PWY-7301
    • 2 reactions found over NA reactions in the full pathway
  • PWY-3221, dTDP-L-rhamnose biosynthesis II: PWY-3221
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7312, dTDP-D-β-fucofuranose biosynthesis: PWY-7312
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7104, dTDP-L-megosamine biosynthesis: PWY-7104
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7414, dTDP-α-D-mycaminose biosynthesis: PWY-7414
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7315, dTDP-N-acetylthomosamine biosynthesis: PWY-7315
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis: PWY-7413
    • 1 reactions found over NA reactions in the full pathway
  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis I: DTDPRHAMSYN-PWY
    • 3 reactions found over NA reactions in the full pathway
  • PWY-6953, dTDP-3-acetamido-α-D-fucose biosynthesis: PWY-6953
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis: PWY-7814
    • 2 reactions found over NA reactions in the full pathway
  • PWY-7316, dTDP-N-acetylviosamine biosynthesis: PWY-7316
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: PWY-7318
    • 1 reactions found over NA reactions in the full pathway
  • PWY-6973, dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: PWY-6973
    • 1 reactions found over NA reactions in the full pathway
  • PWY-6974, dTDP-L-olivose biosynthesis: PWY-6974
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7688, dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: PWY-7688
    • 1 reactions found over NA reactions in the full pathway
  • PWY-6808, dTDP-D-forosamine biosynthesis: PWY-6808
    • 1 reactions found over NA reactions in the full pathway
  • PWY-6942, dTDP-D-desosamine biosynthesis: PWY-6942
    • 1 reactions found over NA reactions in the full pathway
  • PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis: PWY-7440
    • 1 reactions found over NA reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=DTDPGLUCDEHYDRAT-RXN&oldid=8969"