Difference between revisions of "RXN-13186"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] == * common name: ** cis-aconitate hydratase ** D-threo-isocit...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13186 RXN-13186] == * ec number: ** [http://enzyme.expasy.org/EC/1.14.11.27 EC-1.14.11.27] * di...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13186 RXN-13186] ==
−
* common name:
+
* ec number:
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** cis-aconitate hydratase
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** [http://enzyme.expasy.org/EC/1.14.11.27 EC-1.14.11.27]
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** D-threo-isocitrate hydro-lyase (cis-aconitate-forming)
 
 
* direction:
 
* direction:
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** REVERSIBLE
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** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
+
** 1 [[CPD-8900]][c] '''+''' 2 [[2-KETOGLUTARATE]][c] '''+''' 2 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Protein-L-lysine]][c] '''+''' 2 [[SUC]][c] '''+''' 2 [[FORMALDEHYDE]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 cis-aconitate[c] '''+''' 1 H2O[c] '''<=>''' 1 D-threo-isocitrate[c]
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** 1 a [protein] N6,N6-dimethyl-L-lysine[c] '''+''' 2 2-oxoglutarate[c] '''+''' 2 oxygen[c] '''+''' 1 H+[c] '''=>''' 1 a [protein]-L-lysine[c] '''+''' 2 succinate[c] '''+''' 2 formaldehyde[c] '''+''' 2 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN12291_c0_g1_i1]]
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* Gene: [[DN21730_c0_g1_i2]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN20506_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
−
** '''5''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
−
** '''11''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
−
** '''7''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
−
** '''6''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''9''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 
−
** '''5''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''5''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
−
** '''6''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42033 42033]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
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** [http://www.genome.jp/dbget-bin/www_bget?R10056 R10056]
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{{#set: common name=cis-aconitate hydratase}}
+
{{#set: ec number=EC-1.14.11.27}}
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{{#set: common name=D-threo-isocitrate hydro-lyase (cis-aconitate-forming)}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: gene associated=DN21730_c0_g1_i2}}
−
{{#set: gene associated=DN12291_c0_g1_i1|DN20506_c0_g1_i1}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-5392|P105-PWY|PWY66-398|PWY-7124|P23-PWY|PWY-5913|FERMENTATION-PWY|PWY-6969|REDCITCYC|PWY-6549|TCA|GLYOXYLATE-BYPASS|PWY-7254|PWY-5690|PWY-6728}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction RXN-13186

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=RXN-13186&oldid=9053"