Difference between revisions of "DUTP-PYROP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOTIDE-PYROPHOSPHATASE-RXN NUCLEOTIDE-PYROPHOSPHATASE-RXN] == * common name: ** nucleoside trip...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * common name: ** deoxyuridine triphosphatase * ec number: ** [ht...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOTIDE-PYROPHOSPHATASE-RXN NUCLEOTIDE-PYROPHOSPHATASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
 
* common name:
 
* common name:
−
** nucleoside triphosphate pyrophosphohydrolase
+
** deoxyuridine triphosphatase
 
* ec number:
 
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23]
 
** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9]
 
** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9]
 
* direction:
 
* direction:
Line 11: Line 12:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Nucleoside-Triphosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Nucleoside-Monophosphates]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a nucleoside triphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 a nucleoside 5'-monophosphate[c] '''+''' 1 diphosphate[c] '''+''' 1 H+[c]
+
** 1 dUTP[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 dUMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN12413_c0_g1_i1]]
+
* Gene: [[DN22472_c0_g1_i2]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 23: Line 24:
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN22472_c0_g1_i2]]
+
* Gene: [[DN1679_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN1679_c0_g1_i1]]
+
* Gene: [[DN12413_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''4''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
 +
** '''2''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 35: Line 46:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01532 R01532]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00056 R00056]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22413 P22413]
+
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
−
** [http://www.uniprot.org/uniprot/Q64610 Q64610]
+
** [http://www.uniprot.org/uniprot/P33316 P33316]
−
{{#set: common name=nucleoside triphosphate pyrophosphohydrolase}}
+
** [http://www.uniprot.org/uniprot/O15923 O15923]
 +
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
 +
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
 +
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
 +
** [http://www.uniprot.org/uniprot/P43792 P43792]
 +
** [http://www.uniprot.org/uniprot/P32518 P32518]
 +
** [http://www.uniprot.org/uniprot/P68635 P68635]
 +
** [http://www.uniprot.org/uniprot/P68634 P68634]
 +
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 +
** [http://www.uniprot.org/uniprot/P03195 P03195]
 +
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 +
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 +
** [http://www.uniprot.org/uniprot/P33317 P33317]
 +
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 +
** [http://www.uniprot.org/uniprot/P43058 P43058]
 +
** [http://www.uniprot.org/uniprot/O80091 O80091]
 +
** [http://www.uniprot.org/uniprot/O36404 O36404]
 +
** [http://www.uniprot.org/uniprot/O41033 O41033]
 +
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 +
** [http://www.uniprot.org/uniprot/O39251 O39251]
 +
** [http://www.uniprot.org/uniprot/O01934 O01934]
 +
** [http://www.uniprot.org/uniprot/P10234 P10234]
 +
** [http://www.uniprot.org/uniprot/P06968 P06968]
 +
** [http://www.uniprot.org/uniprot/P09254 P09254]
 +
** [http://www.uniprot.org/uniprot/P28892 P28892]
 +
** [http://www.uniprot.org/uniprot/P28893 P28893]
 +
{{#set: common name=deoxyuridine triphosphatase}}
 +
{{#set: ec number=EC-3.6.1.23}}
 
{{#set: ec number=EC-3.6.1.9}}
 
{{#set: ec number=EC-3.6.1.9}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN12413_c0_g1_i1|DN22472_c0_g1_i3|DN22472_c0_g1_i2|DN1679_c0_g1_i1}}
+
{{#set: gene associated=DN22472_c0_g1_i2|DN22472_c0_g1_i3|DN1679_c0_g1_i1|DN12413_c0_g1_i1}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=PWY0-166|PWY-7187|PWY-7206|PWY-7184|PWY-6545}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:23, 15 January 2021

Reaction DUTP-PYROP-RXN

  • common name:
    • deoxyuridine triphosphatase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dUTP[c] + 1 H2O[c] => 1 H+[c] + 1 dUMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over NA reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 4 reactions found over NA reactions in the full pathway
  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation: PWY-7206
    • 2 reactions found over NA reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over NA reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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