Difference between revisions of "Category:Pathway"

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(Created page with "Category:reaction == Reaction HOMOACONITATE-HYDRATASE-RXN == * direction: ** left-to-right * common-name: ** homoaconitate hydratase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction RXN0-5393 == * direction: ** left-to-right * common-name: ** beta-hydroxydecanoyl thiol ester dehydrase, faba/fabz ** clpp/crotonase-like dom...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HOMOACONITATE-HYDRATASE-RXN ==
+
== Reaction RXN0-5393 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** homoaconitate hydratase
+
** beta-hydroxydecanoyl thiol ester dehydrase, faba/fabz
 +
** clpp/crotonase-like domain
 +
** enoyl-coenzyme a hydratase/3-hydroxyacyl coenzyme a dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.36 ec-4.2.1.36]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HOMO-CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[HOMO-I-CIT]][c]
+
* 1 [[CPD0-1162]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-1163]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-13_001950]]
+
* Gene: [[Ec-16_003560]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-16_001250]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-06_001380]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-14_006530]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3081]], L-lysine biosynthesis V:
+
* [[PWY0-1337]], oleate β-oxidation:
−
** '''3''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''35''' reactions in the full pathway
−
* [[LYSINE-AMINOAD-PWY]], L-lysine biosynthesis IV:
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P241-PWY]], coenzyme B biosynthesis:
 
−
** '''2''' reactions found over '''16''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR123259
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15488 15488]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04371 R04371]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q58409 Q58409]
 
−
** [http://www.uniprot.org/uniprot/P49367 P49367]
 
−
** [http://www.uniprot.org/uniprot/Q9UT74 Q9UT74]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=homoaconitate hydratase}}
+
{{#set: common-name=clpp/crotonase-like domain|enoyl-coenzyme a hydratase/3-hydroxyacyl coenzyme a dehydrogenase|beta-hydroxydecanoyl thiol ester dehydrase, faba/fabz}}
−
{{#set: ec-number=ec-4.2.1.36}}
+
{{#set: ec-number=ec-4.2.1.17}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=esiliculosus_genome}}
 
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 09:08, 15 March 2021

Reaction RXN0-5393

  • direction:
    • left-to-right
  • common-name:
    • beta-hydroxydecanoyl thiol ester dehydrase, faba/fabz
    • clpp/crotonase-like domain
    • enoyl-coenzyme a hydratase/3-hydroxyacyl coenzyme a dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1337, oleate β-oxidation:
    • 1 reactions found over 35 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123259





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