Manual
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Common-name
Ec-number
Reconstruction tool
Reconstruction source
Reconstruction comment
Nb gene associated
Nb pathway associated
Biomass rxn
Curation
2 biomass rxn
Forfba
1
0
Exchange BIOMASS
Curation
2 biomass rxn
Exchange biomass to boundary
0
0
ExchangeSeed ADENOSYLCOBALAMIN
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed AMMONIA
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed BIOTIN
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed CA+2
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed CARBON-DIOXIDE
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed CL-
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed CO+2
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed COB-I-ALAMIN
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed CPD-3
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed CPD-315
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed CU+
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed CU+2
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed EDTA
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed FE+2
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed FE+3
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed K+
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed Light
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed MG+2
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed MN+2
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed NA+
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed NITRATE
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed OXYGEN-MOLECULE
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed PROTON
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed SULFATE
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed THIAMINE
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed WATER
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
ExchangeSeed ZN+2
Curation
Import from medium
Added to manage seeds from boundary to extracellular compartment
0
0
R07063
Curation
1 keggrxns to add
Reaction from kegg for the production of cpd-8117 (gamma-linolenate)
0
0
R07861
Curation
1 keggrxns to add
Reaction from kegg for the production of cpd-12653 (stearidonate)
0
0
R08184
Curation
1 keggrxns to add
Reaction from kegg for the production of docosanoate
0
0
R08190
Curation
1 keggrxns to add
Reaction from kegg for the production of eicosadienoates
0
0
RXN-11876
Ec-5.5.1.9
Curation
Reactions add esil
Curation sterols (girard et al.)
1
1
RXN-11878
Ec-1.3.1.70
Curation
Reactions add esil
Curation sterols (girard et al.)
1
1
RXN-11881
Cytochrome p450
4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol 14-demethylase
Ec-1.14.13.70
Curation
Pathwaytools
Esiliculosus genome
Reactions add esil
N.a
Curation sterols (girard et al.)
2
0
RXN-11887
Ec-1.14.19.20
Curation
Reactions add esil
Curation sterols (girard et al.)
1
2
RXN-13709
4-methylsterol monooxygenase
Ec-1.14.18.9
Curation
Reactions add esil
Curation sterols (girard et al.)
0
0
RXN-14146
Ec-4.1.2
Curation
2 cycrxns to add
Reaction added for curation
1
0
RXN-1501 METACYC18.5
Curation
1 cycrxns to add
Reaction from metacyc 18.5 to produce linolenic acid. reaction phospholipase-a2-rxn deleted in return because implies linolenic acid compound class only
2
0
RXN-15490
Curation
2 lightrxns to add
Exchange reaction for light
0
0
RXN-21829
Ec-1.14.18.10
Curation
Reactions add esil
Curation sterols (girard et al.)
0
0
RXN-21830
Ec-1.1.1.418
Curation
Reactions add esil
Curation sterols (girard et al.)
1
1
RXN-21831
Ec-1.1.1.270
Curation
Reactions add esil
Curation sterols (girard et al.)
0
1
RXN-22198
Curation
Reactions creator esil
Gallo2020
1
1
RXN-22206
Curation
Reactions creator esil
Gallo2020
1
1
RXN-8349 PLANTCYC
Curation
1 cycrxns to add
Reaction from plantcyc20.5
0
0
RXN66-318
3-beta hydroxysteroid dehydrogenase/isomerase
Ec-1.1.1.170
Curation
Pathwaytools
Esiliculosus genome
Reactions add esil
N.a
Curation sterols (girard et al.)
2
3
RXN66-319
Zymosterol 3-dehydrogenase
Ec-1.1.1.270
Curation
Reactions add esil
Curation sterols (girard et al.)
0
2
RXN66-320
Ec-5.3.3.5
Curation
Reactions add esil
Curation sterols (girard et al.)
1
2
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