Difference between revisions of "RXN-11479"

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(Created page with "Category:reaction == Reaction TRIOSEPISOMERIZATION-RXN == * direction: ** reversible * common-name: ** triose-phosphate isomerase ** triosephosphate isomerase * ec-number:...")
(Created page with "Category:reaction == Reaction RXN-11479 == * direction: ** left-to-right * common-name: ** beta-ketoacyl synthase, n-terminal ** beta-ketoacyl synthase, partial ** thiolas...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRIOSEPISOMERIZATION-RXN ==
+
== Reaction RXN-11479 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** triose-phosphate isomerase
+
** beta-ketoacyl synthase, n-terminal
−
** triosephosphate isomerase
+
** beta-ketoacyl synthase, partial
 +
** thiolase-like, subgroup
 +
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.1 ec-5.3.1.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
+
* 1 [[Glutaryl-ACP-methyl-esters]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Ketopimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-08_000500]]
+
* Gene: [[Ec-12_000650]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[Ec-27_002090]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[Ec-24_000360]]
+
* Gene: [[Ec-12_000640]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[Ec-27_003480]]
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[Ec-03_002790]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[Ec-23_004160]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I:
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
+
** '''7''' reactions found over '''11''' reactions in the full pathway
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
−
** '''11''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV:
 
−
** '''8''' reactions found over '''10''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY66-373]], sucrose degradation V (sucrose &alpha;-glucosidase):
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7003]], glycerol degradation to butanol:
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY66-399]], gluconeogenesis III:
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''12''' reactions found over '''12''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* METANETX-RXN : MNXR104918
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18588 18588]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015]
+
** [http://www.genome.jp/dbget-bin/www_bget?R10119 R10119]
−
* UNIPROT:
+
* METANETX-RXN : MNXR113492
−
** [http://www.uniprot.org/uniprot/P19118 P19118]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P21820 P21820]
+
{{#set: common-name=beta-ketoacyl synthase, n-terminal|thiolase-like, subgroup|beta-ketoacyl synthase, partial|3-oxoacyl-[acyl-carrier-protein] synthase}}
−
** [http://www.uniprot.org/uniprot/P48501 P48501]
+
{{#set: ec-number=ec-2.3.1.41}}
−
** [http://www.uniprot.org/uniprot/P62002 P62002]
 
−
** [http://www.uniprot.org/uniprot/O27120 O27120]
 
−
** [http://www.uniprot.org/uniprot/P27876 P27876]
 
−
** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6]
 
−
** [http://www.uniprot.org/uniprot/P19583 P19583]
 
−
** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2]
 
−
** [http://www.uniprot.org/uniprot/P47721 P47721]
 
−
** [http://www.uniprot.org/uniprot/P47670 P47670]
 
−
** [http://www.uniprot.org/uniprot/P50918 P50918]
 
−
** [http://www.uniprot.org/uniprot/P43727 P43727]
 
−
** [http://www.uniprot.org/uniprot/Q58923 Q58923]
 
−
** [http://www.uniprot.org/uniprot/O28965 O28965]
 
−
** [http://www.uniprot.org/uniprot/Q59182 Q59182]
 
−
** [http://www.uniprot.org/uniprot/O59536 O59536]
 
−
** [http://www.uniprot.org/uniprot/P36204 P36204]
 
−
** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31]
 
−
** [http://www.uniprot.org/uniprot/P04828 P04828]
 
−
** [http://www.uniprot.org/uniprot/P00943 P00943]
 
−
** [http://www.uniprot.org/uniprot/P00942 P00942]
 
−
** [http://www.uniprot.org/uniprot/P00940 P00940]
 
−
** [http://www.uniprot.org/uniprot/P60175 P60175]
 
−
** [http://www.uniprot.org/uniprot/P0A858 P0A858]
 
−
** [http://www.uniprot.org/uniprot/P60174 P60174]
 
−
** [http://www.uniprot.org/uniprot/P00941 P00941]
 
−
** [http://www.uniprot.org/uniprot/P15426 P15426]
 
−
** [http://www.uniprot.org/uniprot/P17751 P17751]
 
−
** [http://www.uniprot.org/uniprot/P00939 P00939]
 
−
** [http://www.uniprot.org/uniprot/P12863 P12863]
 
−
** [http://www.uniprot.org/uniprot/P07669 P07669]
 
−
** [http://www.uniprot.org/uniprot/P35144 P35144]
 
−
** [http://www.uniprot.org/uniprot/P48494 P48494]
 
−
** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7]
 
−
** [http://www.uniprot.org/uniprot/P29613 P29613]
 
−
** [http://www.uniprot.org/uniprot/P30741 P30741]
 
−
** [http://www.uniprot.org/uniprot/Q01893 Q01893]
 
−
** [http://www.uniprot.org/uniprot/P48499 P48499]
 
−
** [http://www.uniprot.org/uniprot/P48496 P48496]
 
−
** [http://www.uniprot.org/uniprot/P46226 P46226]
 
−
** [http://www.uniprot.org/uniprot/P46225 P46225]
 
−
** [http://www.uniprot.org/uniprot/P48492 P48492]
 
−
** [http://www.uniprot.org/uniprot/Q56738 Q56738]
 
−
** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5]
 
−
** [http://www.uniprot.org/uniprot/P46711 P46711]
 
−
** [http://www.uniprot.org/uniprot/O32757 O32757]
 
−
** [http://www.uniprot.org/uniprot/O74067 O74067]
 
−
** [http://www.uniprot.org/uniprot/P48491 P48491]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=triosephosphate isomerase|triose-phosphate isomerase}}
 
−
{{#set: ec-number=ec-5.3.1.1}}
 
 
{{#set: nb gene associated=4}}
 
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
+
{{#set: reconstruction source=esiliculosus_genome}}

Latest revision as of 09:05, 18 March 2021

Reaction RXN-11479

  • direction:
    • left-to-right
  • common-name:
    • beta-ketoacyl synthase, n-terminal
    • beta-ketoacyl synthase, partial
    • thiolase-like, subgroup
    • 3-oxoacyl-[acyl-carrier-protein] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6519, 8-amino-7-oxononanoate biosynthesis I:
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR113492

Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




Retrieved from "http://gem-aureme.genouest.org//esilgem/index.php?title=RXN-11479&oldid=90500"