Difference between revisions of "3.4.21.102-RXN"

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(Created page with "Category:reaction == Reaction DUDPKIN-RXN == * direction: ** left-to-right * common-name: ** nucleoside diphosphate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7...")
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DUDPKIN-RXN ==
+
== Reaction OXALODECARB-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nucleoside diphosphate kinase
+
** malate dehydrogenase (decarboxylating) (nad+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
+
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
 +
** [http://enzyme.expasy.org/EC/4.1.1.3 ec-4.1.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c]
+
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[Ec-07_002070]]
−
* Gene: [[Ec-22_003280]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[Ec-04_001140]]
+
* Gene: [[Ec-01_003680]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[Ec-07_002060]]
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[Ec-07_000140]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[Ec-26_003930]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-03_001380]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-11_005170]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-11_004330]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
+
* [[PWY-6339]], syringate degradation:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
+
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
+
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
−
** '''14''' reactions found over '''13''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28583 28583]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02331 R02331]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P13187 P13187]
 +
** [http://www.uniprot.org/uniprot/P13155 P13155]
 +
** [http://www.uniprot.org/uniprot/P13156 P13156]
 +
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nucleoside diphosphate kinase}}
+
{{#set: common-name=malate dehydrogenase (decarboxylating) (nad+)}}
−
{{#set: ec-number=ec-2.7.4.6}}
+
{{#set: ec-number=ec-1.1.1.38|ec-4.1.1.3}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
+
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 18:51, 12 January 2021

Reaction OXALODECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • malate dehydrogenase (decarboxylating) (nad+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6339, syringate degradation:
    • 1 reactions found over 9 reactions in the full pathway
  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 1 reactions found over 6 reactions in the full pathway
  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 1 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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