Difference between revisions of "RXN0-2601"

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(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * common-name: ** phytoene synthase; chloroplast precursor * synonymous: ** psase ** geranylger...")
(Created page with "Category:reaction == Reaction RXN0-2601 == * direction: ** left-to-right * common-name: ** dna glycosylase ** dna-(apurinic or apyrimidinic site) lyase * ec-number: ** [ht...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.5.1.32-RXN ==
+
== Reaction RXN0-2601 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phytoene synthase; chloroplast precursor
+
** dna glycosylase
−
* synonymous:
+
** dna-(apurinic or apyrimidinic site) lyase
−
** psase
+
* ec-number:
−
** geranylgeranyl-diphosphate geranylgeranyltransferase
+
** [http://enzyme.expasy.org/EC/4.2.99.18 ec-4.2.99.18]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Damaged-DNA-Pyrimidine]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-04_002810]]
+
* Gene: [[Ec-16_004990]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[Ec-19_001460]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[Ec-01_006350]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[Ec-00_001490]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[Ec-18_003720]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6287]], neurosporene biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR123145
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P53609 P53609]
 
−
** [http://www.uniprot.org/uniprot/P37295 P37295]
 
−
** [http://www.uniprot.org/uniprot/P22872 P22872]
 
−
** [http://www.uniprot.org/uniprot/P53610 P53610]
 
−
** [http://www.uniprot.org/uniprot/P53612 P53612]
 
−
** [http://www.uniprot.org/uniprot/P17056 P17056]
 
−
** [http://www.uniprot.org/uniprot/P49293 P49293]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phytoene synthase; chloroplast precursor}}
+
{{#set: common-name=dna glycosylase|dna-(apurinic or apyrimidinic site) lyase}}
−
{{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
+
{{#set: ec-number=ec-4.2.99.18}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=esiliculosus_genome}}
 
{{#set: reconstruction source=esiliculosus_genome}}

Latest revision as of 09:05, 18 March 2021

Reaction RXN0-2601

  • direction:
    • left-to-right
  • common-name:
    • dna glycosylase
    • dna-(apurinic or apyrimidinic site) lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR123145





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